=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for R-4.4.1.tar.gz
=> Checksum SHA512 OK for R-4.4.1.tar.gz
===> Installing dependencies for R-4.4.1
==========================================================================
The following variables will affect the build process of this package,
R-4.4.1. Their current value is shown below:
* JPEG_DEFAULT = jpeg
* KRB5_DEFAULT = heimdal
* PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp
* SSLBASE = /usr
* SSLCERTBUNDLE (not defined)
* SSLCERTS = /etc/openssl/certs
* SSLDIR = /etc/openssl
* SSLKEYS = /etc/openssl/private
Based on these variables, the following variables have been set:
* BLAS_INCLUDES (not defined)
* BLAS_LIBS = -lblas
* BLAS_PC = blas
* BLAS_TYPE = netlib
* CBLAS_LIBS (not defined)
* CBLAS_PC (not defined)
* JPEGBASE (defined, but empty)
* JPEG_TYPE = jpeg
* KRB5BASE (defined, but empty)
* KRB5_TYPE = heimdal
* LAPACKE_LIBS (not defined)
* LAPACKE_PC (not defined)
* LAPACK_LIBS = -llapack -lblas
* LAPACK_PC = lapack
* TERMCAP_TYPE = termcap
You may want to abort the process now with CTRL-C and change the value
of variables in the first group before continuing. Be sure to run
`/usr/bin/make clean' after the changes.
==========================================================================
=> Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.80.4
=> Tool dependency libtool-fortran>=2.4.2nb9: found libtool-fortran-2.4.7nb1
=> Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.7nb1
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency automake>=1.9: found automake-1.16.5nb3
=> Tool dependency autoconf>=2.58: found autoconf-2.72
=> Tool dependency gmake>=3.81: found gmake-4.4.1
=> Tool dependency imake-[0-9]*: found imake-1.0.10
=> Tool dependency gtexinfo>=5.1: found gtexinfo-7.1
=> Tool dependency pkgconf-[0-9]*: found pkgconf-2.3.0
=> Tool dependency distcc-[0-9]*: found distcc-3.4
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Build dependency x11-links>=1.36: found x11-links-1.36
=> Full dependency perl>=5.0: found perl-5.38.2
=> Full dependency libiconv>=1.9.1nb4: found libiconv-1.17
=> Full dependency gettext-lib>=0.22: found gettext-lib-0.22.5
=> Full dependency glib2>=2.76.4nb1: found glib2-2.80.4
=> Full dependency pcre2>=10.30: found pcre2-10.44
=> Full dependency pango>=1.52.2nb1: found pango-1.54.0
=> Full dependency png>=1.6.0nb1: found png-1.6.44
=> Full dependency cairo>=1.18.0nb2: found cairo-1.18.2
=> Full dependency readline>=6.0: found readline-8.2nb2
=> Full dependency jpeg>=9: found jpeg-9f
=> Full dependency tiff>=4.6.0: found tiff-4.7.0
=> Full dependency lapack>=3.9.0nb1: found lapack-3.12.0
=> Full dependency curl>=8.7.1nb1: found curl-8.10.1
=> Full dependency tk>=8.6.13nb1: found tk-8.6.14
=> Full dependency gcc10>=10.3.0nb2: found gcc10-10.5.0nb2
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Overriding tools for R-4.4.1
===> Extracting for R-4.4.1
===> Patching for R-4.4.1
=> Applying pkgsrc patches for R-4.4.1
===> Creating toolchain wrappers for R-4.4.1
===> Configuring for R-4.4.1
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force
configure.ac:1866: warning: macro 'AM_LANGINFO_CODESET' not found in library
configure.ac:2437: warning: macro 'AM_NLS' not found in library
configure.ac:2441: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library
configure.ac:2442: warning: macro 'AM_GNU_GETTEXT' not found in library
autoreconf: configure.ac: tracing
configure.ac: warning: AM_GNU_GETTEXT is used, but not AM_GNU_GETTEXT_VERSION or AM_GNU_GETTEXT_REQUIRE_VERSION
autoreconf: running: libtoolize --copy --force
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'tools'.
libtoolize: copying file 'tools/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: running: aclocal --force
configure.ac:1866: warning: macro 'AM_LANGINFO_CODESET' not found in library
configure.ac:2437: warning: macro 'AM_NLS' not found in library
configure.ac:2441: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library
configure.ac:2442: warning: macro 'AM_GNU_GETTEXT' not found in library
autoreconf: running: /usr/pkg/bin/autoconf --force
autoreconf: running: /usr/pkg/bin/autoheader --force
autoreconf: configure.ac: not using Automake
autoreconf: Leaving directory '.'
=> Generating pkg-config files for builtin xz package.
=> Generating pkg-config file for builtin expat package.
=> Modifying GNU configure scripts to avoid --recheck
=> Replacing config-guess with pkgsrc versions
=> Replacing config-sub with pkgsrc versions
=> Replacing install-sh with pkgsrc version
checking build system type... sparc64--netbsd
checking host system type... sparc64--netbsd
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users
checking for sed... /usr/bin/sed
checking for which... /usr/bin/which
checking for less... /usr/bin/less
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... no
checking for pdftex... no
configure: WARNING: you cannot build PDF versions of the R manuals
checking for pdflatex... (cached) no
configure: WARNING: you cannot build PDF versions of vignettes and help pages
checking for makeindex... no
checking for texi2any... /usr/pkg/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for /tmp/pkgbuild/math/R/work.sparc64/.tools/bin/install-info... /tmp/pkgbuild/math/R/work.sparc64/.tools/bin/install-info
checking for texi2dvi... /usr/pkg/bin/texi2dvi
checking for kpsewhich... no
checking for latex inconsolata package... checking for unzip... (cached) /usr/bin/unzip
checking for zip... no
checking for gzip... (cached) /usr/bin/gzip
checking for bzip2... /usr/bin/bzip2
checking for xdg-open... no
checking for firefox... no
checking for mozilla... no
checking for epiphany... no
checking for galeon... no
checking for opera... no
checking for kfmclient... no
checking for gnome-moz-remote... no
checking for open... no
checking for lynx... no
checking for links... no
configure: WARNING: I could not determine a browser
checking for xdg-open... no
checking for acroread... no
checking for acroread4... no
checking for evince... no
checking for atril... no
checking for xpdf... no
checking for gv... no
checking for gnome-gv... no
checking for ggv... no
checking for okular... no
checking for kpdf... no
checking for open... no
checking for gpdf... no
checking for kghostview... no
configure: WARNING: I could not determine a PDF viewer
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... no
checking for byacc... no
checking for yacc... yes
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /tmp/pkgbuild/math/R/work.sparc64/.tools/bin/pkg-config
checking for sparc64--netbsd-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking how to run the C preprocessor... gcc -E
looking for a modern Fortran compiler
checking for sparc64--netbsd-gfortran... gfortran
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether c++ accepts -g... yes
checking for c++ option to enable C++11 features... none needed
checking whether c++ -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5 can compile C++ code... yes
checking how to run the C++ preprocessor... c++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc accepts -fvisibility... yes
checking whether c++ accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for sparc64--netbsd-gcc... no
checking for sparc64--netbsd-objcc... no
checking for sparc64--netbsd-objc... no
checking for sparc64--netbsd-cc... no
checking for sparc64--netbsd-CC... no
checking for sparc64--netbsd-clang... no
checking for gcc... gcc
checking whether the compiler supports GNU Objective C... yes
checking whether gcc accepts -g... yes
checking whether gcc -std=gnu17 is a C17 compiler... yes
checking whether gcc -std=gnu23 is a C23 compiler... no
checking whether gcc -std=gnu2x is a C23 compiler... yes
checking whether gcc -std=gnu90 is a C90 compiler... yes
checking whether gcc -std=gnu99 is a C99 compiler... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... (cached) ld
checking if the linker (ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... (cached) 262144
checking how to convert sparc64--netbsd file names to sparc64--netbsd format... func_convert_file_noop
checking how to convert sparc64--netbsd file names to toolchain format... func_convert_file_noop
checking for ld option to reload object files... -r
checking for sparc64--netbsd-file... no
checking for file... file
checking for sparc64--netbsd-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$
checking for sparc64--netbsd-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for sparc64--netbsd-ar... (cached) ar
checking for archiver @FILE support... @
checking for sparc64--netbsd-strip... no
checking for strip... strip
checking for sparc64--netbsd-ranlib... no
checking for ranlib... ranlib
checking for gawk... /usr/bin/awk
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for sparc64--netbsd-mt... no
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... rm: conftest*: No such file or directory
yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... rm: conftest*: No such file or directory
no
checking dynamic linker characteristics... NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... c++ -E
checking for ld used by c++... ld
checking if the linker (ld) is GNU ld... yes
checking whether the c++ linker (ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... rm: conftest*: No such file or directory
yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (ld) supports shared libraries... yes
checking dynamic linker characteristics... NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... rm: conftest*: No such file or directory
yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (ld) supports shared libraries... yes
checking dynamic linker characteristics... NetBSD ld.elf_so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... no
checking for readline/history.h... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... no
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking for fcntl.h... yes
checking for glob.h... yes
checking for grp.h... yes
checking for pwd.h... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking for sys/resource.h... yes
checking for sys/select.h... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/time.h... (cached) yes
checking for sys/times.h... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking for utime.h... yes
checking for arpa/inet.h... yes
checking for elf.h... yes
checking for features.h... no
checking for floatingpoint.h... no
checking for langinfo.h... yes
checking for netdb.h... yes
checking for netinet/in.h... yes
checking for sys/param.h... (cached) yes
checking for stdalign.h... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... yes
checking for locale.h... yes
checking for stdarg.h... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for egrep -e... (cached) /usr/bin/egrep
checking for GNU C library with version >= 2... no
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
checking for C stack direction... down
configure: WARNING: Not using the 'long double' type
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc supports -c -o FILE.lo... yes
checking for gcc option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran... -L/tmp/pkgbuild/math/R/work.sparc64/.buildlink/lib -L/tmp/pkgbuild/math/R/work.sparc64/.x11-buildlink/lib -L/usr/pkg/gcc10/lib/gcc/sparc64--netbsd/10.5.0 -L/usr/pkg/gcc10/lib/gcc/sparc64--netbsd/10.5.0/../../.. -Wl,-R/usr/pkg/gcc10//lib/. -Wl,-R/usr/pkg/gcc10/lib/. -lgfortran -lm -lpthread
checking how to get verbose linking output from gcc... -v
checking for C libraries of gcc... -L/tmp/pkgbuild/math/R/work.sparc64/.buildlink/lib -L/tmp/pkgbuild/math/R/work.sparc64/.x11-buildlink/lib -lgcc_s -lpthread
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc agree on int and double... yes
checking whether gfortran and gcc agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether c++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... yes, using $(OBJC) -MM
checking for ObjC runtime library... -lobjc
checking for ObjC runtime style... unknown
checking whether gcc accepts -fobjc-exceptions... yes
checking for type of 'hidden' Fortran character lengths... size_t
checking for xmkmf... /usr/pkg/bin/xmkmf
checking whether c++ supports C++11 features with -std=gnu++11... yes
checking whether c++ supports C++14 features with -std=gnu++14... yes
checking whether c++ supports C++17 features with -std=gnu++17... yes
checking whether c++ supports C++20 features with -std=gnu++20... no
checking whether c++ supports C++20 features with -std=gnu++2a... no
checking whether c++ supports C++20 features with -std=c++20... no
checking whether c++ supports C++20 features with +std=c++20... no
checking whether c++ supports C++20 features with -std:c++20... no
checking whether c++ supports C++20 features with -std=c++2a... no
checking whether c++ supports C++20 features with +std=c++2a... no
checking whether c++ supports C++20 features with -std:c++2a... no
checking whether c++ supports C++20 features by default... no
configure: No compiler with C++20 support was found
checking whether supports C++23 features with -std=gnu++23... no
checking whether supports C++23 features with -std=gnu++2b... no
checking whether supports C++23 features with -std=c++23... no
checking whether supports C++23 features with +std=c++23... no
checking whether supports C++23 features with -std:c++23... no
checking whether supports C++23 features with -std=c++2b... no
checking whether supports C++23 features with +std=c++2b... no
checking whether supports C++23 features with -std:c++2b... no
checking whether supports C++23 features by default... no
configure: No compiler with C++23 support was found
checking whether c++ -std=gnu++17 can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking for c++ -std=gnu++17 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... no
checking for alloca... yes
checking whether alloca is declared... no
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... no
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwnam exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... no
checking whether sched_getaffinity exists and is declared... no
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... no
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for stpcpy... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... no
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime, gmtime, localtime work correctly in 2020... yes
checking whether mktime sets errno... no
checking whether mktime works correctly after 2037... yes
checking whether mktime works correctly before 1902... yes
checking whether mktime works correctly in 1969... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... no
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for dgemm_ in -lblas... yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... (cached) yes
checking for dpstrf_ in -llapack -lblas... yes
checking for iconv.h... yes
checking for iconv... in libiconv
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... yes
checking for iconv... yes
checking for iconv declaration...
extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking whether wcwidth exists and is declared... yes
checking whether wcswidth exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries /usr/X11R7/lib, headers /usr/X11R7/include
checking whether -R must be followed by a space... no
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking for X11/Xmu/Atoms.h... yes
checking for XmuInternAtom in -lXmu... yes
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for /usr/pkg/lib/tclConfig.sh... /usr/pkg/lib/tclConfig.sh
checking for /usr/pkg/lib/tkConfig.sh... /usr/pkg/lib/tkConfig.sh
checking for tcl.h... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR library... no
checking for XDR support... no
checking for inflateInit2_ in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... (cached) yes
checking whether zlib support suffices... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... (cached) yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for libdeflate.h... no
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for curl-config... /usr/pkg/bin/curl-config
checking libcurl version ... 8.10.1
checking for curl/curl.h... yes
checking if libcurl is >= 7.28.0... yes
checking if libcurl supports https... yes
checking if pkg-config knows about libjpeg... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if pkg-config knows about libpng... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking if pkg-config knows about libtiff... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for gcc option to enable large file support... none needed
checking for declarations of fseeko and ftello... yes
checking whether KERN_USRSTACK sysctl is supported... no
checking for lpr... lpr
checking for paperconf... false
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... (cached) -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... no
checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
rm: libtoolT: No such file or directory
config.status: executing stamp-h commands
configure: WARNING: --with-libdeflate-compression requires libdeflate
R is now configured for sparc64--netbsd
Source directory: .
Installation directory: /usr/pkg
C compiler: gcc -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5
Fortran fixed-form compiler: gfortran -O
Default C++ compiler: c++ -std=gnu++17 -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5
C++11 compiler: c++ -std=gnu++11 -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5
C++14 compiler: c++ -std=gnu++14 -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5
C++17 compiler: c++ -std=gnu++17 -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5
C++20 compiler:
C++23 compiler:
Fortran free-form compiler: gfortran -O
Obj-C compiler: gcc -g -O2 -fobjc-exceptions
Interfaces supported: X11, tcltk
External libraries: pcre2, readline, BLAS(generic), LAPACK(generic), curl
Additional capabilities: PNG, JPEG, TIFF, cairo
Options enabled: shared R library, R profiling
Capabilities skipped: NLS, ICU
Options not enabled: shared BLAS, memory profiling
Recommended packages: yes
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of vignettes and help pages
configure: WARNING: I could not determine a browser
configure: WARNING: I could not determine a PDF viewer
=> Modifying libtool scripts to use pkgsrc libtool
=> Modifying libtool scripts to use pkgsrc depcomp