=> Bootstrap dependency digest>=20010302: found digest-20190127 ===> Building for ncbi-blast+-2.8.1nb3 if test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.flat; then \ cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake all_p; \ else \ cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build && /usr/pkg/bin/gmake all_r; \ fi gmake[1]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/ctools/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/ctools/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/ctools/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ctools/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/ctools/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sra/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sra/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sra/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT sra/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/sra/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/gui/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/gui/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/gui/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT gui/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/gui/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sample/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sample/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/sample/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT sample/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/sample/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/internal/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/internal/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/internal/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT internal/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/internal/Makefile /usr/pkg/bin/gmake -C corelib -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib/test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=corelib -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=test_mt -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=corelib -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:877:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbidbg.hpp:47:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbidiag.hpp:1813:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1861:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1924:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1949:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1981:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:1012:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:3574:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbi_param.hpp:41:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbifile.hpp:48, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp:39: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiapp.hpp:362:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbifile.cpp: In function 'void ncbi::s_GetFileSystemInfo(const string&, ncbi::CFileUtil::SFileSystemInfo*, ncbi::TFileSystemInfo)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbifile.cpp:5020:10: warning: variable 'need_name_max' set but not used [-Wunused-but-set-variable] bool need_name_max = true; ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/guard.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/expr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/version.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for 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-I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/guard.cpp -o guard.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/request_status.cpp -o request_status.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxncbi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxncbi.a /bin/ln -f .xncbi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xncbi.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib TMPL=test_mt -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test_mt.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtest_mt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtest_mt.a /bin/ln -f .test_mt.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.test_mt.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib/test' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/corelib' /usr/pkg/bin/gmake -C util -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/diff/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/diff/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/diff/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT diff/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/diff/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/image/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/image/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/image/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT image/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/image/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/qparse/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/qparse/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/qparse/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT qparse/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/qparse/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/demo/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util TMPL=util -w export-headers gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util TMPL=util -w all gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/cache_async.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/stream_source.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/table_printer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/util_misc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/rangelist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/distribution.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/scheduler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/itransaction.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/uttp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/util_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/line_reader.cpp. Updating dependency information for 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-I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxutil.a /bin/ln -f .xutil.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xutil.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C regexp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/regexp TMPL=regexp -w mark-as-disabled gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/regexp' /usr/pkg/bin/gmake -C xregexp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include -I/usr/pkg/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include -I/usr/pkg/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include -I/usr/pkg/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxregexp.a /bin/ln -f .xregexp.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xregexp.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxregexp_template_tester.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xregexp_template_tester.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/xregexp' /usr/pkg/bin/gmake -C compress -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' /usr/pkg/bin/gmake -C bzip2 -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/bzip2' /usr/pkg/bin/gmake -C zlib -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/zlib' /usr/pkg/bin/gmake -C api -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api TMPL=compress -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api TMPL=compress -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/compress.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/compress.cpp -o compress.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream.cpp -o stream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/tar.cpp -o tar.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive.cpp -o archive.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcompress.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress/api' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/compress' /usr/pkg/bin/gmake -C diff -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/diff' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/diff' /usr/pkg/bin/gmake -C image -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/image' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/image' /usr/pkg/bin/gmake -C tables -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables TMPL=tables -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables TMPL=tables -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/raw_scoremat.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.tables.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/tables' /usr/pkg/bin/gmake -C creaders -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/creaders TMPL=creaders -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/creaders TMPL=creaders -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/creaders/alnread.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.a .libcreaders.a.stamp ar cr libcreaders.a alnread.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcreaders.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcreaders.a /bin/ln -f .creaders.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.creaders.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/creaders' /usr/pkg/bin/gmake -C sequtil -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil TMPL=sequtil -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil TMPL=sequtil -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.sequtil.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/sequtil' /usr/pkg/bin/gmake -C bitset -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/bitset/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/test' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/bitset' /usr/pkg/bin/gmake -C qparse -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/qparse' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/qparse' /usr/pkg/bin/gmake -C lmdb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/LocalLMDB.enabled', needed by 'requirements'. Stop. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdb' /usr/pkg/bin/gmake -C lmdbxx -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/lmdbxx/example.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/lmdbxx -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/util/lmdbxx/example.cpp -o example.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O example.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -llmdb -lpthread -lm -lpthread -o lmdbxx_sample strip lmdbxx_sample /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f lmdbxx_sample /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f lmdbxx_sample /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/lmdbxx_sample gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/lmdbxx' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/test' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util/demo' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/util' /usr/pkg/bin/gmake -C connect -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ext/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ext/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ext/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/ext/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/daemons/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/daemons/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT daemons/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/daemons/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connssl -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connect -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xxconnect -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xconnect -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xthrserv -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connssl -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p mbedtls Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_create.c. 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-I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/camellia.c -o mbedtls/camellia.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ccm.c -o mbedtls/ccm.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cipher.c -o mbedtls/cipher.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cipher_wrap.c -o mbedtls/cipher_wrap.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/cmac.c -o mbedtls/cmac.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ctr_drbg.c -o mbedtls/ctr_drbg.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/des.c -o mbedtls/des.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/dhm.c -o mbedtls/dhm.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecdh.c -o mbedtls/ecdh.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecdsa.c -o mbedtls/ecdsa.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecjpake.c -o mbedtls/ecjpake.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecp.c -o mbedtls/ecp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ecp_curves.c -o mbedtls/ecp_curves.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/entropy.c -o mbedtls/entropy.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/entropy_poll.c -o mbedtls/entropy_poll.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/error.c -o mbedtls/error.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/gcm.c -o mbedtls/gcm.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/havege.c -o mbedtls/havege.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/hmac_drbg.c -o mbedtls/hmac_drbg.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md.c -o mbedtls/md.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c: In function 'mbedtls_net_accept_ncbicxx_2_4_2': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:316:37: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign] (void *) &type, &type_len ) != 0 || ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:655:5: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' int getsockopt(int, int, int, void *__restrict, socklen_t * __restrict); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:326:80: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign] (struct sockaddr *) &client_addr, &n ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:649:5: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' int accept(int, struct sockaddr * __restrict, socklen_t * __restrict); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:334:59: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign] (struct sockaddr *) &client_addr, &n ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:660:9: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' ssize_t recvfrom(int, void *__restrict, size_t, int, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:369:59: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign] (struct sockaddr *) &local_addr, &n ) != 0 || ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c:75:0: /usr/include/sys/socket.h:654:5: note: expected '__socklen_t * restrict {aka unsigned int * restrict}' but argument is of type 'int *' int getsockname(int, struct sockaddr * __restrict, socklen_t * __restrict); ^ +-src/c++/src/connect/mbedtls/md2.c -o mbedtls/md2.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md4.c -o mbedtls/md4.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/mbedtls_md5.c -o mbedtls/mbedtls_md5.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/md_wrap.c -o mbedtls/md_wrap.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c -o mbedtls/memory_buffer_alloc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/oid.c -o mbedtls/oid.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/padlock.c -o mbedtls/padlock.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pem.c -o mbedtls/pem.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pk.c -o mbedtls/pk.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pk_wrap.c -o mbedtls/pk_wrap.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs12.c -o mbedtls/pkcs12.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs5.c -o mbedtls/pkcs5.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkparse.c -o mbedtls/pkparse.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkwrite.c -o mbedtls/pkwrite.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/platform.c -o mbedtls/platform.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ripemd160.c -o mbedtls/ripemd160.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/rsa.c -o mbedtls/rsa.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha1.c -o mbedtls/sha1.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha256.c -o mbedtls/sha256.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/sha512.c -o mbedtls/sha512.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/threading.c -o mbedtls/threading.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/timing.c -o mbedtls/timing.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/mbedtls_version.c -o mbedtls/mbedtls_version.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/version_features.c -o mbedtls/version_features.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/xtea.c -o mbedtls/xtea.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/certs.c -o mbedtls/certs.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/pkcs11.c -o mbedtls/pkcs11.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include 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-Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /bin/rm -f libconnssl.a .libconnssl.a.stamp ar cr libconnssl.a ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnssl.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnssl.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libconnssl.a /bin/ln -f .connssl.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.connssl.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=connect -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c:341:68: warning: variable 'p' set but not used [-Wunused-but-set-variable] const SHEAP_HeapBlock* b = (const SHEAP_HeapBlock*) base, *p = 0; ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/parson.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_file_connector.c. 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /bin/rm -f libconnect.a .libconnect.a.stamp ar cr libconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libconnect.a /bin/ln -f .connect.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.connect.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xxconnect -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket_cxx.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include 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-Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /bin/rm -f libxxconnect.a .libxxconnect.a.stamp ar cr libxxconnect.a ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxxconnect.a /bin/ln -f .xxconnect.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xxconnect.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xconnect -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_ipv6.o ncbi_iprange.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnect.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxconnect.a /bin/ln -f .xconnect.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xconnect.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect TMPL=xthrserv -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] CThreadedServer& m_Server; // NCBI_FAKE_WARNING ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/server.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/server.cpp -o server.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxthrserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xthrserv.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C services -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=xconnserv -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=xconnserv -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc 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-I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxconnserv.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xconnserv.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/neticache_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache.a /bin/ln -f .ncbi_xcache_netcache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache.dep /bin/rm -f libncbi_xcache_netcache-dll.so .libncbi_xcache_netcache-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xcache_netcache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC neticache_client.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxconnserv -lxconnect -lxutil -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_netcache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_netcache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_netcache-dll.so /bin/ln -f .ncbi_xcache_netcache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_netcache-dll.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/blob_storage_netcache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /bin/rm -f libncbi_xblobstorage_netcache.a .libncbi_xblobstorage_netcache.a.stamp ar cr libncbi_xblobstorage_netcache.a blob_storage_netcache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xblobstorage_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xblobstorage_netcache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xblobstorage_netcache.a /bin/ln -f .ncbi_xblobstorage_netcache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xblobstorage_netcache.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/services' /usr/pkg/bin/gmake -C ext -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/ext' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/ext' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/test' /usr/pkg/bin/gmake -C daemons -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/daemons' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect/daemons' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/connect' /usr/pkg/bin/gmake -C cgi -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=cgi -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=fcgi -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=cgi -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgi.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcgi.a /bin/ln -f .xcgi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcgi.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi TMPL=fcgi -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/fcgi_run.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include -DNCBI_XFCGI_EXPORTS /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /bin/rm -f libxfcgi.a .libxfcgi.a.stamp ar cr libxfcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxfcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxfcgi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxfcgi.a /bin/ln -f .xfcgi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xfcgi.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi/test' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/cgi' /usr/pkg/bin/gmake -C html -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/demo/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html TMPL=html -w export-headers gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html TMPL=html -w all gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/html_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/indentstream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/components.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/selection.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/pager.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/page.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/html.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/node.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/node.cpp -o node.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/html.cpp -o html.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/page.cpp -o page.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/pager.cpp -o pager.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/selection.cpp -o selection.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/components.cpp -o components.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/indentstream.cpp -o indentstream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/html_exception.cpp -o html_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxhtml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxhtml.a /bin/ln -f .xhtml.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xhtml.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/test' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html/demo' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/html' /usr/pkg/bin/gmake -C build-system -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system' /usr/pkg/bin/gmake -C helpers -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/helpers' /usr/pkg/bin/gmake -C project_tree_builder -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp -o msvc_prj_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,-rpath,/usr/pkg/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxutil -lxncbi -lxregexp -L/usr/pkg/lib -lpcre -lm -lpthread -o project_tree_builder strip project_tree_builder /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f project_tree_builder /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/project_tree_builder gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' /usr/pkg/bin/gmake -C msbuild -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder/msbuild' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system/project_tree_builder' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/build-system' /usr/pkg/bin/gmake -C serial -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/soap/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/soap/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/soap/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT soap/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/soap/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=serial -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=cserial -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=serial -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serializable.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objstack.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objlist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objhook.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serial.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/iterator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/choice.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/variant.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/member.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/memberlist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/memberid.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/continfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/typemap.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/typeref.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objectio.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/hookdata.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/hookdata.cpp -o hookdata.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objectiter.cpp -o objectiter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objectio.cpp -o objectio.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/typeref.cpp -o typeref.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objstack.cpp -o objstack.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serializable.cpp -o serializable.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serialobject.cpp -o serialobject.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/pathhook.cpp -o pathhook.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/bin/awk: can't open file make_serial.log.new source line number 4 bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serializable.cpp -o serializable.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serialobject.cpp -o serialobject.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/pathhook.cpp -o pathhook.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser.a /bin/ln -f .xser.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xser.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial TMPL=cserial -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/asntypes.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/asntypes.cpp -o asntypes.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/serialasn.cpp -o serialasn.o /bin/rm -f libxcser.a .libxcser.a.stamp ar cr libxcser.a asntypes.o serialasn.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcser.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcser.a /bin/ln -f .xcser.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcser.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C datatool -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool TMPL=datatool -w all In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp:34:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.hpp: In constructor 'ncbi::CBitStringTypeStrings::CBitStringTypeStrings(const string&, const ncbi::CComments&, ncbi::CTypeStrings*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.hpp:133:27: warning: 'ncbi::CBitStringTypeStrings::m_BitNames' will be initialized after [-Wreorder] AutoPtr m_BitNames; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp:201:56: warning: base 'ncbi::CStdTypeStrings' [-Wreorder] : m_BitNames(bitNames), CParent(type,comments,false) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp:199:1: warning: when initialized here [-Wreorder] CBitStringTypeStrings::CBitStringTypeStrings(const string& type, ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/datatool.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/type.cpp -o type.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool strip datatool /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f datatool /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/datatool' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/test' /usr/pkg/bin/gmake -C soap -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/soap' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial/soap' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/serial' /usr/pkg/bin/gmake -C db -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/bdb/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/bdb/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/bdb/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT bdb/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/bdb/Makefile /usr/pkg/bin/gmake -C sqlite -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/sqlite TMPL=sqlitewrapp -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/db/sqlite/sqlitewrapp.cpp -o sqlitewrapp.o /bin/rm -f libsqlitewrapp.a .libsqlitewrapp.a.stamp ar cr libsqlitewrapp.a sqlitewrapp.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsqlitewrapp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsqlitewrapp.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsqlitewrapp.a /bin/ln -f .sqlitewrapp.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.sqlitewrapp.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/sqlite' /usr/pkg/bin/gmake -C bdb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/bdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db/bdb' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/db' /usr/pkg/bin/gmake -C dbapi -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/simple/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/simple/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/simple/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT simple/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/simple/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/lang_bind/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/lang_bind/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT lang_bind/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/lang_bind/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi TMPL=dbapi -w export-headers gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi TMPL=dbapi -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:118:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:269:27: note: declared here virtual CNcbiOstream& GetBlobOStream(size_t blob_size, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:126:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:294:27: note: declared here virtual CNcbiOstream& GetBlobOStream(IConnection *conn, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:156:35: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp: In member function 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:163:72: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] (log_it == eDisableLog) ? fBOS_SkipLogging : 0); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:621:22: note: declared here virtual IWriter* GetBlobWriter(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'void ncbi::CResultSet::x_CacheItems(int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:261:59: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:541:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:329:66: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] return IResultSet::GetBlobOStream(blob_size, log_it, buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:274:27: note: declared here virtual CNcbiOstream& GetBlobOStream(size_t blob_size, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:330:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:325:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:337:72: warning: 'virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] return IResultSet::GetBlobOStream(conn, blob_size, log_it, buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:300:27: note: declared here virtual CNcbiOstream& GetBlobOStream(IConnection *conn, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:338:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:332:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:355:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:348:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:365:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:357:15: note: declared here CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp: In member function 'ncbi::CNcbiOstream& ncbi::CResultSet::xGetBlobOStream(ncbi::CDB_Connection*, size_t, ncbi::TBlobOStreamFlags, size_t, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:384:63: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] unique_ptr desc(m_rs->GetBlobDescriptor()); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:541:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp: In constructor 'ncbi::CBlobOStream::CBlobOStream(ncbi::CDB_CursorCmd*, unsigned int, size_t, std::streamsize, ncbi::TBlobOStreamFlags, ncbi::CDB_Connection*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp:86:69: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] (flags & fBOS_SkipLogging) == 0)); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bytestreambuf.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:890:30: note: declared here virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:122:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:106:15: note: declared here CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:129:68: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] return ICursor::GetBlobOStream(col, blob_size, log_it, buf_size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:602:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:130:1: warning: 'virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:124:15: note: declared here CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:145:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:132:10: note: declared here IWriter* CCursor::GetBlobWriter(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp: In member function 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:151:57: warning: 'virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] return ICursor::GetBlobWriter(col, blob_size, log_it); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:626:22: note: declared here virtual IWriter* GetBlobWriter(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:152:1: warning: 'virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)' is deprecated [-Wdeprecated-declarations] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp:147:10: note: declared here IWriter* CCursor::GetBlobWriter(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp: In constructor 'ncbi::CxBlobWriter::CxBlobWriter(ncbi::CDB_CursorCmd*, unsigned int, size_t, ncbi::TBlobOStreamFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp:89:68: warning: 'virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)' is deprecated [-Wdeprecated-declarations] (flags & fBOS_SkipLogging) == 0); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/driver_mgr.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/public.hpp:890:30: note: declared here virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, ^ gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/variant.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/variant.cpp -o variant.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /bin/rm -f libdbapi.a .libdbapi.a.stamp ar cr libdbapi.a variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbapi.a /bin/ln -f .dbapi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbapi.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C driver -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/util/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/util/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ctlib/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ctlib/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds64/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds64/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds95/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds95/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds100/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds100/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ftds-default/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/mysql/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/mysql/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT mysql/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/samples/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/samples/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT samples/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/samples/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'bool ncbi::I_CursorCmd::UpdateTextImage(unsigned int, ncbi::CDB_Stream&, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:248:12: warning: 'virtual bool ncbi::I_CursorCmd::UpdateBlob(unsigned int, ncbi::CDB_Stream&, bool)' is deprecated [-Wdeprecated-declarations] return UpdateBlob(item_num, data, log_it); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/interfaces.hpp:561:18: note: declared here virtual bool UpdateBlob(unsigned int item_num, CDB_Stream& data, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:248:45: warning: 'virtual bool ncbi::I_CursorCmd::UpdateBlob(unsigned int, ncbi::CDB_Stream&, bool)' is deprecated [-Wdeprecated-declarations] return UpdateBlob(item_num, data, log_it); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/interfaces.hpp:561:18: note: declared here virtual bool UpdateBlob(unsigned int item_num, CDB_Stream& data, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp: In member function 'ncbi::I_BlobDescriptor* ncbi::I_Result::GetImageOrTextDescriptor()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:276:12: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::I_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] return GetBlobDescriptor(); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/interfaces.hpp:769:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(void) = 0; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:276:30: warning: 'virtual ncbi::I_BlobDescriptor* ncbi::I_Result::GetBlobDescriptor()' is deprecated [-Wdeprecated-declarations] return GetBlobDescriptor(); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/driver/interfaces.hpp:769:31: note: declared here virtual I_BlobDescriptor* GetBlobDescriptor(void) = 0; ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/handle_stack.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include 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-I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libdbapi_driver-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbapi_driver-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbapi_driver-dll.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C util -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/util' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/util' /usr/pkg/bin/gmake -C ctlib -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ctlib' /usr/pkg/bin/gmake -C ftds64 -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds64' /usr/pkg/bin/gmake -C ftds95 -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds95' /usr/pkg/bin/gmake -C ftds100 -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds100' /usr/pkg/bin/gmake -C ftds-default -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/ftds-default' /usr/pkg/bin/gmake -C mysql -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/mysql' /usr/pkg/bin/gmake -C odbc -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w mark-as-disabled gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/odbc' /usr/pkg/bin/gmake -C samples -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver/samples' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/driver' /usr/pkg/bin/gmake -C simple -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/simple' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/simple' /usr/pkg/bin/gmake -C cache -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/admintool/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/admintool/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/admintool/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT admintool/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp: In member function 'ncbi::ERW_Result ncbi::CDBAPI_CacheIWriter::x_SaveBlob(ncbi::ICursor&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:436:65: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] ostream& out = cur.GetBlobOStream(1, m_BytesInBuffer); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:441:69: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] ostream& out = cur.GetBlobOStream(1, (size_t)total_bytes); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp: In member function 'bool ncbi::CDBAPI_Cache::x_UpdateBlob(ncbi::IStatement&, const string&, int, const string&, const void*, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:1246:51: warning: 'virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)' is deprecated [-Wdeprecated-declarations] ostream& out = cur->GetBlobOStream(1, size); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here virtual CNcbiOstream& GetBlobOStream(unsigned int col, ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o /bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi.a /bin/ln -f .ncbi_xcache_dbapi.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi.dep /bin/rm -f libncbi_xcache_dbapi-dll.so .libncbi_xcache_dbapi-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xcache_dbapi-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -ldbapi -ldbapi_driver-dll -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xcache_dbapi-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xcache_dbapi-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xcache_dbapi-dll.so /bin/ln -f .ncbi_xcache_dbapi-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xcache_dbapi-dll.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/test' /usr/pkg/bin/gmake -C admintool -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache/admintool' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/cache' /usr/pkg/bin/gmake -C lang_bind -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/lang_bind' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi/test' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/dbapi' /usr/pkg/bin/gmake -C objects -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects -w all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/usr/pkg/bin/gmake -w"; export MAKE; \ ( cd $i && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh $i all; ) \ || case "-w" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me ' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me Warning: (810.1) No service name provided for CTrackMgrClient [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me src/c++/src/objects/seqcode' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/s[2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... eq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -C general -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/unit_test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh general all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general TMPL=general -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general TMPL=general -w all eq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general__.cpp -o general__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general___.cpp -o general___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgeneral.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgeneral.a /bin/ln -f .general.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.general.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/test' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/general' /usr/pkg/bin/gmake -C biblio -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh biblio all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio TMPL=biblio -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio TMPL=biblio -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiblio.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libbiblio.a /bin/ln -f .biblio.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.biblio.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biblio' /usr/pkg/bin/gmake -C medline -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh medline all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline TMPL=medline -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline TMPL=medline -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedline.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmedline.a /bin/ln -f .medline.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.medline.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medline' /usr/pkg/bin/gmake -C pub -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pub all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub TMPL=pub -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub TMPL=pub -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpub.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpub.a /bin/ln -f .pub.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pub.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pub' /usr/pkg/bin/gmake -C seqcode -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqcode all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode TMPL=seqcode -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode TMPL=seqcode -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqcode.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqcode.a /bin/ln -f .seqcode.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqcode.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqcode' /usr/pkg/bin/gmake -C seq -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/unit_test/Makefile gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -w all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seq all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq TMPL=seq -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq TMPL=seq -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../$x ; \ (cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqblock/seqblock.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq' In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:10:0, from seqloc__.cpp:1: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/Seq_id.cpp: In member function 'void ncbi::objects::CSeq_id::GetLabel(std::string*, int*, ncbi::objects::CSeq_id::ELabelType) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/../seqloc/Seq_id.cpp:1676:12: warning: enumeration value 'eFastaContent' not handled in switch [-Wswitch] switch (type) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/sofa_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqalign__.cpp -o seqalign__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include seqblock__.cpp -o seqblock__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseq.a /bin/ln -f .seq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/test' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seq' /usr/pkg/bin/gmake -C seqset -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset/test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqset all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset TMPL=seqset -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset TMPL=seqset -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqset.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqset.a /bin/ln -f .seqset.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqset.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqset' /usr/pkg/bin/gmake -C submit -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh submit all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit TMPL=submit -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit TMPL=submit -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsubmit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsubmit.a /bin/ln -f .submit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.submit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/submit' /usr/pkg/bin/gmake -C seqedit -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqedit all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit TMPL=seqedit -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit TMPL=seqedit -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqedit.a /bin/ln -f .seqedit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqedit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqedit' /usr/pkg/bin/gmake -C seqsplit -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqsplit all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit TMPL=seqsplit -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqsplit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqsplit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqsplit' /usr/pkg/bin/gmake -C id1 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1/test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh id1 all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1 -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1cli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid1.a /bin/ln -f .id1.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id1.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1 TMPL=id1cli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /bin/rm -f libid1cli.a .libid1cli.a.stamp ar cr libid1cli.a id1_client.o id1_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid1cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid1cli.a /bin/ln -f .id1cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id1cli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id1' /usr/pkg/bin/gmake -C id2 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh id2 all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2 -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2cli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid2.a /bin/ln -f .id2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id2.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2 TMPL=id2cli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /bin/rm -f libid2cli.a .libid2cli.a.stamp ar cr libid2cli.a id2_client.o id2_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid2cli.a /bin/ln -f .id2cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id2cli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/id2' /usr/pkg/bin/gmake -C entrez2 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2/demo/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh entrez2 all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.a .libentrez2.a.stamp ar cr libentrez2.a entrez2__.o entrez2___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libentrez2.a /bin/ln -f .entrez2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.entrez2.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.a .libentrez2cli.a.stamp ar cr libentrez2cli.a entrez2_client.o entrez2_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrez2cli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libentrez2cli.a /bin/ln -f .entrez2cli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.entrez2cli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2/demo' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrez2' /usr/pkg/bin/gmake -C pubmed -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pubmed all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed TMPL=pubmed -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed TMPL=pubmed -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpubmed.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpubmed.a /bin/ln -f .pubmed.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pubmed.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pubmed' /usr/pkg/bin/gmake -C medlars -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh medlars all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars TMPL=medlars -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars TMPL=medlars -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmedlars.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmedlars.a /bin/ln -f .medlars.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.medlars.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/medlars' /usr/pkg/bin/gmake -C mla -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh mla all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mla -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mlacli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mla -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medlars/medlars.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmla.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmla.a /bin/ln -f .mla.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mla.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla TMPL=mlacli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmlacli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmlacli.a /bin/ln -f .mlacli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mlacli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mla' /usr/pkg/bin/gmake -C proj -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh proj all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj TMPL=proj -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj TMPL=proj -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pubmed/pubmed.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /bin/rm -f libproj.a .libproj.a.stamp ar cr libproj.a proj__.o proj___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libproj.a /bin/ln -f .proj.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.proj.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/proj' /usr/pkg/bin/gmake -C scoremat -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh scoremat all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat TMPL=scoremat -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat TMPL=scoremat -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libscoremat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libscoremat.a /bin/ln -f .scoremat.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.scoremat.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/scoremat' /usr/pkg/bin/gmake -C blast -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blast all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=blast -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=blast -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xnetblast.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast TMPL=xnetblastcli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxnetblastcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xnetblastcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blast' /usr/pkg/bin/gmake -C blastdb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blastdb all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb TMPL=blastdb -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb TMPL=blastdb -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastdb.a /bin/ln -f .blastdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastdb.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastdb' /usr/pkg/bin/gmake -C blastxml -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blastxml all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml TMPL=blastxml -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml TMPL=blastxml -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastxml.a /bin/ln -f .blastxml.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastxml.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml' /usr/pkg/bin/gmake -C blastxml2 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh blastxml2 all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastxml2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastxml2.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/blastxml2' /usr/pkg/bin/gmake -C mmdb -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/Makefile.sources builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -w all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb TMPL=mmdb -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb TMPL=mmdb -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' status=0 ; \ MAKE="/usr/pkg/bin/gmake -w"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2' /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb1__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb1__.cpp -o mmdb1__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb2__.cpp -o mmdb2__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb3__.cpp -o mmdb3__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb1___.cpp -o mmdb1___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb2___.cpp -o mmdb2___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include mmdb3___.cpp -o mmdb3___.o /bin/rm -f libmmdb.a .libmmdb.a.stamp ar cr libmmdb.a mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmmdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmmdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmmdb.a /bin/ln -f .mmdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mmdb.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mmdb' /usr/pkg/bin/gmake -C cn3d -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh cn3d all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d TMPL=cn3d -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d TMPL=cn3d -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /bin/rm -f libcn3d.a .libcn3d.a.stamp ar cr libcn3d.a cn3d__.o cn3d___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcn3d.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcn3d.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcn3d.a /bin/ln -f .cn3d.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.cn3d.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cn3d' /usr/pkg/bin/gmake -C cdd -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh cdd all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd TMPL=cdd -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd TMPL=cdd -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /bin/rm -f libcdd.a .libcdd.a.stamp ar cr libcdd.a cdd__.o cdd___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcdd.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcdd.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcdd.a /bin/ln -f .cdd.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.cdd.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/cdd' /usr/pkg/bin/gmake -C ncbimime -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime/test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh ncbimime all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime TMPL=ncbimime -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biblio/biblio.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/medline/medline.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cn3d/cn3d.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /bin/rm -f libncbimime.a .libncbimime.a.stamp ar cr libncbimime.a ncbimime__.o ncbimime___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbimime.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbimime.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbimime.a /bin/ln -f .ncbimime.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbimime.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/ncbimime' /usr/pkg/bin/gmake -C pcsubstance -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pcsubstance all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /bin/rm -f libpcsubstance.a .libpcsubstance.a.stamp ar cr libpcsubstance.a pcsubstance__.o pcsubstance___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcsubstance.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcsubstance.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpcsubstance.a /bin/ln -f .pcsubstance.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pcsubstance.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcsubstance' /usr/pkg/bin/gmake -C pcassay -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh pcassay all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay TMPL=pcassay -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay TMPL=pcassay -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /bin/rm -f libpcassay.a .libpcassay.a.stamp ar cr libpcassay.a pcassay__.o pcassay___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpcassay.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libpcassay.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libpcassay.a /bin/ln -f .pcassay.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.pcassay.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/pcassay' /usr/pkg/bin/gmake -C gbseq -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh gbseq all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq TMPL=gbseq -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq TMPL=gbseq -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgbseq.a /bin/ln -f .gbseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gbseq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbseq' /usr/pkg/bin/gmake -C insdseq -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh insdseq all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq TMPL=insdseq -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq TMPL=insdseq -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /bin/rm -f libinsdseq.a .libinsdseq.a.stamp ar cr libinsdseq.a insdseq__.o insdseq___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libinsdseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libinsdseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libinsdseq.a /bin/ln -f .insdseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.insdseq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/insdseq' /usr/pkg/bin/gmake -C tinyseq -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh tinyseq all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq TMPL=tinyseq -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /bin/rm -f libtinyseq.a .libtinyseq.a.stamp ar cr libtinyseq.a tinyseq__.o tinyseq___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtinyseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtinyseq.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtinyseq.a /bin/ln -f .tinyseq.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.tinyseq.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/tinyseq' /usr/pkg/bin/gmake -C biotree -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh biotree all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree TMPL=biotree -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree TMPL=biotree -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /bin/rm -f libbiotree.a .libbiotree.a.stamp ar cr libbiotree.a biotree__.o biotree___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiotree.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libbiotree.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libbiotree.a /bin/ln -f .biotree.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.biotree.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/biotree' /usr/pkg/bin/gmake -C entrezgene -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh entrezgene all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene TMPL=entrezgene -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /bin/rm -f libentrezgene.a .libentrezgene.a.stamp ar cr libentrezgene.a entrezgene__.o entrezgene___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrezgene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libentrezgene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libentrezgene.a /bin/ln -f .entrezgene.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.entrezgene.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/entrezgene' /usr/pkg/bin/gmake -C omssa -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh omssa all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa TMPL=omssa -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa TMPL=omssa -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /bin/rm -f libomssa.a .libomssa.a.stamp ar cr libomssa.a omssa__.o omssa___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libomssa.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libomssa.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libomssa.a /bin/ln -f .omssa.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.omssa.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/omssa' /usr/pkg/bin/gmake -C remap -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh remap all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remap -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remapcli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remap -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /bin/rm -f libremap.a .libremap.a.stamp ar cr libremap.a remap__.o remap___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremap.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libremap.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libremap.a /bin/ln -f .remap.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.remap.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap TMPL=remapcli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /bin/rm -f libremapcli.a .libremapcli.a.stamp ar cr libremapcli.a remap_client.o remap_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libremapcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libremapcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libremapcli.a /bin/ln -f .remapcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.remapcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/remap' /usr/pkg/bin/gmake -C seqtest -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh seqtest all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest TMPL=seqtest -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest TMPL=seqtest -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /bin/rm -f libseqtest.a .libseqtest.a.stamp ar cr libseqtest.a seqtest__.o seqtest___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqtest.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqtest.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqtest.a /bin/ln -f .seqtest.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqtest.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/seqtest' /usr/pkg/bin/gmake -C taxon1 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh taxon1 all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=taxon1 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp:786:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( m_types.size() <= field_no ) { ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtaxon1.a /bin/ln -f .taxon1.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.taxon1.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1 TMPL=local_taxon -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/local_taxon.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon1/local_taxon.cpp -o local_taxon.o /bin/rm -f liblocal_taxon.a .liblocal_taxon.a.stamp ar cr liblocal_taxon.a local_taxon.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblocal_taxon.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f liblocal_taxon.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/liblocal_taxon.a /bin/ln -f .local_taxon.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.local_taxon.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon1' /usr/pkg/bin/gmake -C taxon3 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3 && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh taxon3 all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3 TMPL=taxon3 -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtaxon3.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtaxon3.a /bin/ln -f .taxon3.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.taxon3.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/taxon3' /usr/pkg/bin/gmake -C gbproj -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh gbproj all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj TMPL=gbproj -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj TMPL=gbproj -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqset/seqset.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/submit/submit.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj' In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp:9:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function 'void ncbi::objects::CProjectFolder::RemoveAllChildItems()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable 'item' [-Wunused-variable] CProjectItem& item = **it; ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgbproj.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgbproj.a /bin/ln -f .gbproj.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gbproj.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/gbproj' /usr/pkg/bin/gmake -C trackmgr -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh trackmgr all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgr -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtrackmgr.a /bin/ln -f .trackmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.trackmgr.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtrackmgrcli.a /bin/ln -f .trackmgrcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.trackmgrcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr TMPL=trackmgrgridcli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackset_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/blast_client.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/tms_exception.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/tms_exception.cpp -o tms_exception.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/blast_client.cpp -o blast_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/displaytrack_client.cpp -o displaytrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createusertrack_client.cpp -o createusertrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp -o createremotetrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp -o removeusertrack_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/item_resolver_client.cpp -o item_resolver_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/switch_context_client.cpp -o switch_context_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp -o track_attrvalue_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackset_client.cpp -o trackset_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/createtrackset_client.cpp -o createtrackset_client.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp -o supported_assemblies_client.o /bin/rm -f libtrackmgrgridcli.a .libtrackmgrgridcli.a.stamp ar cr libtrackmgrgridcli.a tms_exception.o blast_client.o displaytrack_client.o createusertrack_client.o createremotetrack_client.o removeusertrack_client.o item_resolver_client.o switch_context_client.o track_attrvalue_client.o trackset_client.o createtrackset_client.o supported_assemblies_client.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtrackmgrgridcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libtrackmgrgridcli.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libtrackmgrgridcli.a /bin/ln -f .trackmgrgridcli.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.trackmgrgridcli.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/trackmgr' /usr/pkg/bin/gmake -C valerr -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh valerr all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr TMPL=valerr -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr TMPL=valerr -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /bin/rm -f libvalerr.a .libvalerr.a.stamp ar cr libvalerr.a valerr__.o valerr___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalerr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalerr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvalerr.a /bin/ln -f .valerr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.valerr.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valerr' /usr/pkg/bin/gmake -C valid -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh valid all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid TMPL=valid -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid TMPL=valid -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvalid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvalid.a /bin/ln -f .valid.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.valid.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/valid' /usr/pkg/bin/gmake -C access -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh access all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access TMPL=access -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access TMPL=access -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access/access__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access/access__.cpp -o access__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/access/access___.cpp -o access___.o /bin/rm -f libaccess.a .libaccess.a.stamp ar cr libaccess.a access__.o access___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libaccess.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libaccess.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libaccess.a /bin/ln -f .access.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.access.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/access' /usr/pkg/bin/gmake -C docsum -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh docsum all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum TMPL=docsum -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum TMPL=docsum -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /bin/rm -f libdocsum.a .libdocsum.a.stamp ar cr libdocsum.a docsum__.o docsum___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdocsum.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdocsum.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdocsum.a /bin/ln -f .docsum.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.docsum.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/docsum' /usr/pkg/bin/gmake -C featdef -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh featdef all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef TMPL=featdef -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef TMPL=featdef -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /bin/rm -f libfeatdef.a .libfeatdef.a.stamp ar cr libfeatdef.a featdef__.o featdef___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libfeatdef.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libfeatdef.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libfeatdef.a /bin/ln -f .featdef.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.featdef.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/featdef' /usr/pkg/bin/gmake -C genomecoll -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh genome_collection all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh gencoll_client all Waiting for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/make_asn.lock/usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' . Acquired /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/make_asn.lock for PID 26013 (make_asn) Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=genome_collection -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.19.1 gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenome_collection.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.genome_collection.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll TMPL=gencoll_client -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client__.cpp -o gencoll_client__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gencoll_client___.cpp -o gencoll_client___.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp -o genomic_collections_cli.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/genomic_collections_cli_.cpp -o genomic_collections_cli_.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/cached_assembly.cpp -o cached_assembly.o /bin/rm -f libgencoll_client.a .libgencoll_client.a.stamp ar cr libgencoll_client.a gencoll_client__.o gencoll_client___.o genomic_collections_cli.o genomic_collections_cli_.o cached_assembly.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgencoll_client.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgencoll_client.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgencoll_client.a /bin/ln -f .gencoll_client.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gencoll_client.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C gc_cli -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli TMPL=gc_cli -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp -o gc_cli.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O gc_cli.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lgencoll_client-static -lgenome_collection-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxconnect-static -lxcompress-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lz -lm -lpthread -o gc_cli strip gc_cli /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gc_cli /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f gc_cli /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/gc_cli gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll/gc_cli' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genomecoll' /usr/pkg/bin/gmake -C homologene -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh homologene all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene TMPL=homologene -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene TMPL=homologene -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqalign/seqalign.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /bin/rm -f libhomologene.a .libhomologene.a.stamp ar cr libhomologene.a homologene__.o homologene___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libhomologene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libhomologene.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libhomologene.a /bin/ln -f .homologene.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.homologene.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/homologene' /usr/pkg/bin/gmake -C mim -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh mim all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim TMPL=mim -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim TMPL=mim -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /bin/rm -f libmim.a .libmim.a.stamp ar cr libmim.a mim__.o mim___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmim.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmim.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmim.a /bin/ln -f .mim.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.mim.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/mim' /usr/pkg/bin/gmake -C objprt -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh objprt all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt TMPL=objprt -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt TMPL=objprt -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /bin/rm -f libobjprt.a .libobjprt.a.stamp ar cr libobjprt.a objprt__.o objprt___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjprt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjprt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libobjprt.a /bin/ln -f .objprt.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.objprt.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/objprt' /usr/pkg/bin/gmake -C variation -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh variation all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation TMPL=variation -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation TMPL=variation -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seqloc/seqloc.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/pub/pub.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.variation.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation' /usr/pkg/bin/gmake -C macro -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh macro all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro TMPL=macro -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro TMPL=macro -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro' In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::string&, const string&, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_ReplaceNocase(std::string&, const string&, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:129:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp:158:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetConstraintString(ncbi::objects::CString_constraint::ECase) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp:479:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetCompareString(const ncbi::objects::CMatchString&, ncbi::objects::CString_constraint::ECase) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/String_constraint.cpp:513:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /bin/rm -f libmacro.a .libmacro.a.stamp ar cr libmacro.a macro__.o macro___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmacro.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libmacro.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libmacro.a /bin/ln -f .macro.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.macro.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/macro' /usr/pkg/bin/gmake -C genesbyloc -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh genesbyloc all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Nothing to be done for 'all'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /bin/rm -f libgenesbyloc.a .libgenesbyloc.a.stamp ar cr libgenesbyloc.a genesbyloc__.o genesbyloc___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenesbyloc.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgenesbyloc.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgenesbyloc.a /bin/ln -f .genesbyloc.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.genesbyloc.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/genesbyloc' /usr/pkg/bin/gmake -C coords -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh objcoords all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords TMPL=objcoords -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords TMPL=objcoords -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords/objcoords__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /bin/rm -f libobjcoords.a .libobjcoords.a.stamp ar cr libobjcoords.a objcoords__.o objcoords___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libobjcoords.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libobjcoords.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libobjcoords.a /bin/ln -f .objcoords.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.objcoords.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/coords' /usr/pkg/bin/gmake -C varrep -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh varrep all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep TMPL=varrep -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep TMPL=varrep -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.19.1 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep/varrep__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /bin/rm -f libvarrep.a .libvarrep.a.stamp ar cr libvarrep.a varrep__.o varrep___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvarrep.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libvarrep.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libvarrep.a /bin/ln -f .varrep.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.varrep.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/varrep' /usr/pkg/bin/gmake -C variation_libs -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs' /usr/pkg/bin/gmake -C dbsnp -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' /usr/pkg/bin/gmake -C search_by_rsid -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh search_by_rsid all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/trackmgr/trackmgr.asn /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsearchbyrsid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libsearchbyrsid.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libsearchbyrsid.a /bin/ln -f .searchbyrsid.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.searchbyrsid.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/search_by_rsid' /usr/pkg/bin/gmake -C tooltip_service -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' cd /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/new_module.sh dbsnp_tooltip_service all Platform not defined for NetBSD alpha -- please fix me [2] Terminated ${script_dir}/ch... /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w all /usr/pkg/bin/gmake -w -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build DATATOOL=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/datatool -oR /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++ \ -opm /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.19.1 gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbsnp_tooltip_service.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libdbsnp_tooltip_service.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libdbsnp_tooltip_service.a /bin/ln -f .dbsnp_tooltip_service.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.dbsnp_tooltip_service.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp/tooltip_service' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs/dbsnp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects/variation_libs' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objects' /usr/pkg/bin/gmake -C objmgr -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr TMPL=objmgr -w export-headers gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' gmake[3]: Nothing to be done for 'export-headers'. gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr TMPL=objmgr -w all gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_id_sort.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_table_setters.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include 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-fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xobjmgr.dep gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/test' /usr/pkg/bin/gmake -C util -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util TMPL=util -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util TMPL=util -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CBioseqIndex::x_InitFeats()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:1883:20: warning: variable 'sgx' set but not used [-Wunused-but-set-variable] CGapIndex* sgx = NULL; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:43:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/indexer.hpp: In constructor 'ncbi::objects::CGapIndex::CGapIndex(ncbi::TSeqPos, ncbi::TSeqPos, ncbi::TSeqPos, const string&, const std::vector >&, bool, bool, ncbi::objects::CBioseqIndex&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/indexer.hpp:797:10: warning: 'ncbi::objects::CGapIndex::m_IsAssemblyGap' will be initialized after [-Wreorder] bool m_IsAssemblyGap; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/indexer.hpp:787:28: warning: 'ncbi::CWeakRef ncbi::objects::CGapIndex::m_Bsx' [-Wreorder] CWeakRef m_Bsx; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:2832:1: warning: when initialized here [-Wreorder] CGapIndex::CGapIndex (TSeqPos start, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:3345:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (mixedTags); i++) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp:3422:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < str.length(); i++) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:1407:80: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'std::string s_RemoveBracketedOrgFromEnd(std::string, std::string)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2022:61: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2089:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2293:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In function 'size_t s_TitleEndsInOrganism(std::string&, ncbi::CTempString)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2920:68: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2921:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffixIdx(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:2976:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:3129:83: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)' is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/util/strsearch.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:2096:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp: In member function 'std::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp:3556:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp:1808:81: required from here /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp:1736:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp:1098:13: warning: 'bool ncbi::objects::s_IsValidAccession(const string&)' defined but not used [-Wunused-function] static bool s_IsValidAccession(const string& acc) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef.cpp: In member function 'ncbi::objects::CAutoDefModifierCombo* ncbi::objects::CAutoDef::FindBestModifierCombo()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef.cpp:201:28: warning: unused variable 'best' [-Wunused-variable] CAutoDefModifierCombo *best = NULL; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp: In member function 'bool ncbi::objects::CAutoDefFeatureClause::x_GetExonDescription(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:738:28: warning: unused variable 'subtype' [-Wunused-variable] CSeqFeatData::ESubtype subtype = m_MainFeat.GetData().GetSubtype(); ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/weight.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include 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-I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjutil.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xobjutil.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/util' /usr/pkg/bin/gmake -C split -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split TMPL=id2_split -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split TMPL=id2_split -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/split_exceptions.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/size.cpp -o size.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.a .libid2_split.a.stamp ar cr libid2_split.a blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libid2_split.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libid2_split.a /bin/ln -f .id2_split.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.id2_split.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr/split' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objmgr' /usr/pkg/bin/gmake -C objtools -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/unit_test_util/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/unit_test_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/unit_test_util/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test_util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/unit_test_util/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/lds2/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/lds2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/lds2/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cddalignview/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cddalignview/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cddalignview/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT cddalignview/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cddalignview/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/manip/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/manip/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/manip/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT manip/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/manip/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/validator/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/validator/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/validator/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT validator/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/validator/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/asniotest/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/asniotest/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/asniotest/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT asniotest/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/asniotest/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT align/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/eutils/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/eutils/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/eutils/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT eutils/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/eutils/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/snputil/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/snputil/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/snputil/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT snputil/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/snputil/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/uudutil/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/uudutil/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/uudutil/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT uudutil/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/uudutil/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/variation/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/variation/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/variation/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT variation/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/variation/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/writers/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/writers/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/writers/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT writers/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/writers/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/pubseq_gateway/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/pubseq_gateway/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/pubseq_gateway/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway/Makefile /usr/pkg/bin/gmake -C logging -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging TMPL=logging -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging TMPL=logging -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging/listener.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging/message.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging/message.cpp -o message.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxlogging.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxlogging.a /bin/ln -f .xlogging.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xlogging.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/logging' /usr/pkg/bin/gmake -C unit_test_util -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/unit_test_util' /usr/pkg/bin/gmake -C readers -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/app/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/app/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/app/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT app/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers/app/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers/test/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers TMPL=xobjread -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers TMPL=xobjreadex -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/readers' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers TMPL=xobjread -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp:58:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp:74:74: warning: 'void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/agp_read.cpp:33:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/aln_reader.cpp:409:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (row > m_MiddleSections.size()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp:472:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (blockSizes.size() != blockCount) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp:493:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (blockStarts.size() != blockCount) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp: In member function 'bool ncbi::objects::CBedReader::xParseFeature(const string&, ncbi::CRef&, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/bed_reader.cpp:598:14: warning: variable 'record_copy' set but not used [-Wunused-but-set-variable] CTempString record_copy = NStr::TruncateSpaces_Unsafe(line); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::ILineReader&, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp: In constructor 'ncbi::objects::CFastaReader::CFastaReader(ncbi::objects::CReaderBase::TReaderFlags, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:242:27: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_fIdCheck(f_idcheck) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp: In destructor 'virtual ncbi::objects::CFastaReader::~CFastaReader()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:248:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:248:33: warning: 'ncbi::objects::CFastaReader::m_IDGenerator' is deprecated [-Wdeprecated-declarations] CFastaReader::~CFastaReader(void) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:381:45: note: declared here NCBI_DEPRECATED CRef m_IDGenerator; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp: In member function 'virtual void ncbi::objects::CFastaReader::ParseDefLine(const TStr&, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = data.range_end - data.range_start; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:614:9: warning: 'ncbi::objects::CFastaReader::m_ExpectedEnd' is deprecated [-Wdeprecated-declarations] m_ExpectedEnd = data.range_end - data.range_start; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/fasta.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/readers/fasta.hpp:386:29: note: declared here NCBI_DEPRECATED TSeqPos m_ExpectedEnd; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff3_reader.cpp: In member function 'virtual bool ncbi::objects::CGff3Reader::xUpdateAnnotGeneric(const ncbi::objects::CGff2Record&, ncbi::CRef, ncbi::CRef, ncbi::objects::ILineErrorListener*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff3_reader.cpp:599:10: warning: unused variable 'st' [-Wunused-variable] auto st = pFeature->GetData().GetSubtype(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gtf_reader.cpp: In member function 'virtual bool ncbi::objects::CGtfReader::x_UpdateAnnotCds(const ncbi::objects::CGff2Record&, ncbi::CRef)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gtf_reader.cpp:269:10: warning: unused variable 'needXref' [-Wunused-variable] bool needXref = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1261:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1348:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/gff2_reader.cpp:1435:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i, std::basic_string > >&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:879:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0; i&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/readers/source_mod_parser.cpp:915:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (auto i=0; i >&, std::vector >&, std::vector&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] int found_short(-1); ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL 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-D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqdb.a /bin/ln -f .seqdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqdb.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seqdb_demo.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lm -lpthread -o seqdb_demo strip seqdb_demo /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_demo /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/seqdb_demo gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/demo' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:148:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (ssize_t i = 0; i < oids2iterate.size(); i++) { ^ gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O seqdb_perf.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lseqdb-static -lxobjutil-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lz -llmdb -lpthread -lm -lpthread -o seqdb_perf strip seqdb_perf /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f seqdb_perf /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/seqdb_perf gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_reader' /usr/pkg/bin/gmake -C seqdb_writer -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /bin/rm -f libwritedb.a .libwritedb.a.stamp ar cr libwritedb.a writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libwritedb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libwritedb.a /bin/ln -f .writedb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.writedb.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/seqdb_writer' /usr/pkg/bin/gmake -C gene_info_reader -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libgene_info.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libgene_info.a /bin/ln -f .gene_info.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.gene_info.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O gene_info_reader_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lgene_info-static -lxobjutil-static -lseqdb-static -lblastdb-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lz -lbz2 -llzo2 -lz -llmdb -lpthread -lm -lpthread -o gene_info_reader strip gene_info_reader /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f gene_info_reader /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/gene_info_reader gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/demo' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_reader' /usr/pkg/bin/gmake -C gene_info_writer -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/gene_info_writer' /usr/pkg/bin/gmake -C services -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/services TMPL=blast_services -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/services/blast_services.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_services.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblast_services.a /bin/ln -f .blast_services.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blast_services.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/services' /usr/pkg/bin/gmake -C blastdb_format -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w all In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:128:43: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] CSeqFormatter(const CSeqFormatter& rhs); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config /* = CSeqFormatterConfig() */) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp: In member function 'std::string ncbi::CBlastDBExtractor::ExtractLeafTaxIds()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:396:24: warning: variable 'taxids_iter' set but not used [-Wunused-but-set-variable] set::iterator taxids_iter = taxids.begin(); ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastdb_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastdb_format.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast/blastdb_format' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/blast' /usr/pkg/bin/gmake -C lds2 -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/lds2' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/lds2' /usr/pkg/bin/gmake -C data_loaders -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT lds2/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT patcher/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT asn_cache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT cdd/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd/Makefile /usr/pkg/bin/gmake -C genbank -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pubseq/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pubseq2/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader.dep /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lz -lbz2 -llzo2 -lz -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank.dep /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xloader_genbank-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC gbloader.o gbload_util.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_genbank-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xloader_genbank-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -C cache -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache.dep /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_cache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_cache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_cache-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/cache' /usr/pkg/bin/gmake -C pubseq -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq' /usr/pkg/bin/gmake -C id2 -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2.dep /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_id2-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_id2.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id2-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id2-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id2' /usr/pkg/bin/gmake -C id1 -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1.dep /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_id1-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_id1.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxcompress -lm -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_id1-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_id1-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/id1' /usr/pkg/bin/gmake -C pubseq2 -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/pubseq2' /usr/pkg/bin/gmake -C gicache -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'x_DataToGiData': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:7: warning: unused variable 'logmsg' [-Wunused-variable] char logmsg[256]; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_LoadAdd': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable 'acc_len' [-Wunused-variable] int acc_len; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_SetMeta': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:18: warning: unused variable 'stime' [-Wunused-variable] char meta[512], stime[128]; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:7: warning: unused variable 'meta' [-Wunused-variable] char meta[512], stime[128]; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function 'GICache_GetAccFreqTab': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:11: warning: unused variable 'gi_len' [-Wunused-variable] int64_t gi_len = 0; ^ gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache.a /bin/ln -f .ncbi_xreader_gicache.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache.dep /bin/rm -f libncbi_xreader_gicache-dll.so .libncbi_xreader_gicache-dll.so.stamp /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -shared -o libncbi_xreader_gicache-dll.so -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O -fPIC reader_gicache.o gicache.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lncbi_xreader-dll -llmdb -lpthread /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_gicache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xreader_gicache-dll.so /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xreader_gicache-dll.so /bin/ln -f .ncbi_xreader_gicache-dll.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xreader_gicache-dll.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/gicache' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/genbank' /usr/pkg/bin/gmake -C lds2 -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/lds2' /usr/pkg/bin/gmake -C blastdb -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w export-headers gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[6]: Nothing to be done for 'export-headers'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.ncbi_xloader_blastdb_rmt.dep gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/blastdb' /usr/pkg/bin/gmake -C patcher -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/patcher' /usr/pkg/bin/gmake -C asn_cache -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/asn_cache' /usr/pkg/bin/gmake -C cdd -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders/cdd' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/data_loaders' /usr/pkg/bin/gmake -C simple -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/simple TMPL=xobjsimple -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/simple/simple_om.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.a .libxobjsimple.a.stamp ar cr libxobjsimple.a simple_om.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjsimple.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxobjsimple.a /bin/ln -f .xobjsimple.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xobjsimple.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/simple' /usr/pkg/bin/gmake -C alnmgr -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp: In function 'void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef 'TAlnRngColl' locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore > 0 && ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] aln_seq2->m_StrandScore < 0 && ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: 'width2' may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmix.cpp:38: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (plus && prev_start_plus_len < start || ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp: In member function 'bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnseq.cpp: In static member function 'static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around '&&' within '||' [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const TSignedRange&, bool) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (translate && aln_range.GetLength() >= trim_from + trim_to) { ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include 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-I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalnmgr.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalnmgr.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/demo' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/alnmgr' /usr/pkg/bin/gmake -C cddalignview -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cddalignview' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cddalignview' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/test' /usr/pkg/bin/gmake -C manip -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/manip' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/manip' /usr/pkg/bin/gmake -C edit -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/protein_match/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/protein_match/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/protein_match/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT protein_match/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit TMPL=edit -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit TMPL=edit -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:172:44: warning: array subscript has type 'char' [-Wchar-subscripts] while (descr_insert_order[index] != 0) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:45: warning: array subscript has type 'char' [-Wchar-subscripts] if (descr_insert_order[index] >= size()) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (descr_insert_order[index] >= size()) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:175:52: warning: array subscript has type 'char' [-Wchar-subscripts] resize(descr_insert_order[index], kMax_Char); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:176:44: warning: array subscript has type 'char' [-Wchar-subscripts] at(descr_insert_order[index]) = index; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1823:71: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1825:74: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1848:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1850:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] switch (seqmap_ci.GetType()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2429:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2785:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos >= start && pos < start + len) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2989:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start < cut_from) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2992:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] else if (seg_start >= cut_from && ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp:228:68: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] remove_trailingX); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp:52:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/sequence.hpp:934:17: note: declared here static void TranslateCdregion(string& prot, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:87: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/serialbase.hpp:35, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/dblink_field.cpp: In static member function 'static ncbi::objects::edit::CDBLinkField::EDBLinkFieldType ncbi::objects::edit::CDBLinkField::GetTypeForLabel(std::string)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/dblink_field.cpp:283:17: warning: variable 'normal' set but not used [-Wunused-but-set-variable] CTempString normal = GetNormalizedDBLinkFieldName(label); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp: In function 'void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable 'best_fit_size' [-Wunused-variable] int best_fit_size = -1; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustProteinFeaturePartialsToMatchCDS(ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_feat&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:411:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:66:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:411:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:66:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:411:63: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(new_prot); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:34:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:66:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:484:27: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:484:27: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:484:82: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:490:9: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:490:9: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:490:75: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:550:5: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:451:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:550:5: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:451:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:550:56: warning: 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)' is deprecated [-Wdeprecated-declarations] AdjustForCDSPartials(cds, peh.GetSeq_entry_Handle()); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:451:6: note: declared here bool AdjustForCDSPartials(const CSeq_feat& cds, CSeq_entry_Handle seh) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp: In function 'void ncbi::objects::edit::s_AdjustForUTR(const ncbi::objects::CSeq_feat&, int, int, ncbi::objects::CSeq_loc&, bool&, bool&, ncbi::objects::CScope&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:646:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:651:64: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStop(eExtreme_Positional) != cd_start - 1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:661:64: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStop(eExtreme_Positional) != cd_start - 1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp:666:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (utr.GetLocation().GetStart(eExtreme_Positional) != cd_stop + 1) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp: In member function 'bool ncbi::objects::edit::CLocationEditPolicy::ApplyPolicyToFeature(ncbi::objects::CSeq_feat&, ncbi::objects::CScope&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:649:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:66:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:649:19: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:66:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:649:59: warning: 'bool ncbi::objects::edit::AdjustFeaturePartialFlagForLocation(ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] any_change |= AdjustFeaturePartialFlagForLocation(feat); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:66:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool AdjustFeaturePartialFlagForLocation(CSeq_feat& new_feat); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp: In function 'bool ncbi::objects::edit::ApplyPolicyToFeature(const ncbi::objects::edit::CLocationEditPolicy&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:882:38: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:69:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:882:38: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:69:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:882:69: warning: 'bool ncbi::objects::edit::RetranslateCDS(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&)' is deprecated [-Wdeprecated-declarations] if (!retranslate_cds || !RetranslateCDS(*new_feat, scope)) { ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp:35:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/cds_fix.hpp:69:43: note: declared here NCBI_DEPRECATED NCBI_XOBJEDIT_EXPORT bool RetranslateCDS(const CSeq_feat& cds, CScope& scope); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/mail_report.cpp: In function 'void ncbi::objects::edit::MakeMailReportPostReport(ncbi::objects::CSeq_table&, ncbi::objects::CScope&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/mail_report.cpp:103:13: warning: unused variable 'taxid' [-Wunused-variable] int taxid = 0; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = i + 1; j < spans.size(); j++) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp:47:73: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)' defined but not used [-Wunused-function] static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/apply_mods.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gene_utils.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/promote.cpp -o promote.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include 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-Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/apply_mods.cpp -o apply_mods.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o apply_mods.o text_object_description.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxobjedit.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xobjedit.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -C protein_match -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/protein_match' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/edit' /usr/pkg/bin/gmake -C cleanup -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup/test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup TMPL=cleanup -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup.cpp:2700:68: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (abs((long int)this_start - (long int)prev_end) < min_len) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:6394:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:6408:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( first_pos > last_pos ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7621:10: warning: unused variable 'changed' [-Wunused-variable] bool changed = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_GBQualToOrgRef(ncbi::objects::COrg_ref&, ncbi::objects::CSeq_feat&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7880:10: warning: variable 'any_conversions' set but not used [-Wunused-but-set-variable] bool any_conversions = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:909:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:948:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp:975:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rslt[0] != start) ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o newcleanupp.o capitalization_string.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxcleanup.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xcleanup.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup/test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/cleanup' /usr/pkg/bin/gmake -C format -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format TMPL=xformat -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format TMPL=xformat -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::string&, const ncbi::objects::CUser_object&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/comment_item.cpp:369:16: warning: unused variable 'is_html' [-Wunused-variable] const bool is_html = ctx.Config().DoHTML(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp: In member function 'void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp:1378:28: warning: unused variable 'cfg' [-Wunused-variable] const CFlatFileConfig& cfg = ctx.Config(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp: In function 'const string& ncbi::objects::s_AaName(int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp:2012:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp: In static member function 'static std::string ncbi::objects::CFeatureItem::x_SeqIdWriteForTable(const ncbi::objects::CBioseq&, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp:5340:20: warning: variable 'patent' set but not used [-Wunused-but-set-variable] const CSeq_id* patent = NULL; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp:5341:20: warning: variable 'pdb' set but not used [-Wunused-but-set-variable] const CSeq_id* pdb = NULL; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/primary_item.cpp:214:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/primary_item.cpp:215:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp:178:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp:383:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/qualifiers.cpp:1104:10: warning: unused variable 'bHtml' [-Wunused-variable] bool bHtml = ctx.Config().DoHTML(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:1114:34: warning: unused variable 'format' [-Wunused-variable] CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_CollectBioSources(ncbi::objects::CFlatGatherer::TSourceFeatSet&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:1904:13: warning: unused variable 'scope' [-Wunused-variable] CScope* scope = &ctx.GetScope(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp: In lambda function: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:2985:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (gap_data.has_gap && gap_data.gap_start < feat_start) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:2999:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (gap_data.has_gap && gap_data.gap_start == feat_start && feat.GetFeatSubtype() == CSeqFeatData::eSubtype_gap) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp: At global scope: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:829:13: warning: 'bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)' defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:2829:13: warning: 'bool ncbi::objects::s_IsSNP(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] static bool s_IsSNP(const CSeq_feat_Handle& feat) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp:2834:13: warning: 'bool ncbi::objects::s_IsExon(const ncbi::objects::CSeq_feat_Handle&)' defined but not used [-Wunused-function] static bool s_IsExon(const CSeq_feat_Handle& feat) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp: In member function 'void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp:319:10: warning: variable 'isNgNtNwNz' set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp:320:10: warning: variable 'isGED' set but not used [-Wunused-but-set-variable] bool isGED = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp:321:10: warning: variable 'isTPA' set but not used [-Wunused-but-set-variable] bool isTPA = false; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)' defined but not used [-Wunused-function] static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/accession_item.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbse/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp: In member function 'virtual void ncbi::objects::CGBSeqFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp:1025:23: warning: unused variable 'vec' [-Wunused-variable] const CSeqVector& vec = seq.GetSequence(); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gbseq_formatter.cpp:1028:13: warning: unused variable 'base_count' [-Wunused-variable] TSeqPos base_count = from; ^ q_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxformat.a /bin/ln -f .xformat.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xformat.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/format' /usr/pkg/bin/gmake -C validator -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/validator' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/validator' /usr/pkg/bin/gmake -C asniotest -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/asniotest' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/asniotest' /usr/pkg/bin/gmake -C align -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align' /usr/pkg/bin/gmake -C seqmasks_io -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libseqmasks_io.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.seqmasks_io.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/seqmasks_io' /usr/pkg/bin/gmake -C eutils -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/eutils' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/eutils' /usr/pkg/bin/gmake -C align_format -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format TMPL=align_format -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format TMPL=align_format -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::string&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp:4387:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp:4387:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/aln_printer.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/format_flags.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/tabular.cpp -o tabular.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libalign_format.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libalign_format.a /bin/ln -f .align_format.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.align_format.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[5]: Nothing to be done for 'mark-as-disabled_r'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format/unit_test' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/align_format' /usr/pkg/bin/gmake -C snputil -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/snputil' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/snputil' /usr/pkg/bin/gmake -C uudutil -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/uudutil' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/uudutil' /usr/pkg/bin/gmake -C variation -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/variation' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/variation' /usr/pkg/bin/gmake -C writers -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/writers' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/writers' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C pubseq_gateway -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools/pubseq_gateway' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/objtools' /usr/pkg/bin/gmake -C ctools -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/ctools' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/ctools' /usr/pkg/bin/gmake -C sra -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/sra' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/sra' /usr/pkg/bin/gmake -C algo -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/sequence/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/sequence/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/sequence/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT sequence/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/sequence/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/align/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/align/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/align/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT align/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/align/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/structure/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/structure/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/structure/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT structure/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/structure/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/ms/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/ms/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/ms/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT ms/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/ms/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/gnomon/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/gnomon/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/gnomon/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT gnomon/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/gnomon/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/tree/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/tree/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/tree/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT tree/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/tree/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/phy_tree/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/phy_tree/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/phy_tree/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT phy_tree/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/phy_tree/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/seqqa/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/seqqa/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/seqqa/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT seqqa/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/seqqa/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/cobalt/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/cobalt/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/cobalt/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT cobalt/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/cobalt/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/text/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/text/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/text/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT text/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/text/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/volume_merge/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/volume_merge/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/volume_merge/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT volume_merge/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/volume_merge/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/primer/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/primer/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/primer/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT primer/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/primer/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/id_mapper/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/id_mapper/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/id_mapper/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT id_mapper/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/id_mapper/Makefile /usr/pkg/bin/gmake -C dustmask -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/dustmask/symdust.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgodustmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalgodustmask.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/dustmask' /usr/pkg/bin/gmake -C winmask -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask TMPL=xalgowinmask -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor 'ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: 'unit_size' may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgowinmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalgowinmask.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/winmask' /usr/pkg/bin/gmake -C sequence -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/sequence' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/sequence' /usr/pkg/bin/gmake -C blast -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex_search/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT dbindex_search/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT blast_sra_input/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/gumbel_params/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT gumbel_params/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params/Makefile /usr/pkg/bin/gmake -C composition_adjustment -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libcomposition_adjustment.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.composition_adjustment.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment' /usr/pkg/bin/gmake -C core -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core TMPL=blast -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core TMPL=blast -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_kappa.c:3417:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/hspfilter_culling.c: In function 's_BlastHSPCullingRun': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/hspfilter_culling.c:287:23: warning: 'node' may be used uninitialized in this function [-Wmaybe-uninitialized] if (r == node->hsplist) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/hspfilter_culling.c:434:15: note: 'node' was declared here CTreeNode *node; ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/spliced_hits.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_program.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_posit.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/phi_lookup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/pattern.c. 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Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/aa_ungapped.c. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/split_query.c -o split_query.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.a .libblast.a.stamp ar cr libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblast.a /bin/ln -f .blast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blast.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/core' /usr/pkg/bin/gmake -C dbindex -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] unsigned long tmp; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgoblastdbindex.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalgoblastdbindex.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -C makeindex -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O main.o mkindex_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lxalgoblastdbindex-static -lblast-static -lcomposition_adjustment-static -lseqdb-static -lblastdb-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxobjutil-static -ltables-static -lconnect-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lm -lpthread -o makembindex strip makembindex /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f makembindex /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/makembindex gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex' /usr/pkg/bin/gmake -C dbindex_search -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/dbindex_search' /usr/pkg/bin/gmake -C api -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api TMPL=xblast -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api TMPL=xblast -w all In file included from .core_blast_kappa.c:1:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c: In function 'Blast_RedoAlignmentCore_MT': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3417:11: warning: unused variable 'my_stderr' [-Wunused-variable] FILE *my_stderr = stderr; ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/dust_filter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/version.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_advprot_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_aux_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_aux.cpp. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for .core_spliced_hits.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c Updating dependency information for .core_hspfilter_mapper.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c Updating dependency information for .core_jumper.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c Updating dependency information for .core_boost_erf.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c Updating dependency information for .core_blast_hspstream_mt_utils.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c Updating dependency information for .core_blast_traceback_mt_priv.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c Updating dependency information for .core_index_ungapped.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c Updating dependency information for .core_gencode_singleton.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c Updating dependency information for .core_split_query.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c Updating dependency information for .core_blast_dynarray.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c Updating dependency information for .core_blast_sw.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c Updating dependency information for .core_blast_tune.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c Updating dependency information for .core_blast_query_info.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c Updating dependency information for .core_blast_program.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c Updating dependency information for .core_blast_posit.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c Updating dependency information for .core_blast_parameters.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c Updating dependency information for .core_phi_lookup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c Updating dependency information for .core_phi_gapalign.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c Updating dependency information for .core_phi_extend.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c Updating dependency information for .core_pattern.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c Updating dependency information for .core_blast_encoding.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c Updating dependency information for .core_ncbi_math.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c Updating dependency information for .core_ncbi_std.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c Updating dependency information for .core_matrix_freq_ratios.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c Updating dependency information for .core_lookup_wrap.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c Updating dependency information for .core_lookup_util.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c Updating dependency information for .core_link_hsps.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c Updating dependency information for .core_hspfilter_culling.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c Updating dependency information for .core_hspfilter_besthit.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c Updating dependency information for .core_hspfilter_collector.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c Updating dependency information for .core_greedy_align.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c Updating dependency information for .core_gapinfo.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c Updating dependency information for .core_blast_util.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c Updating dependency information for .core_blast_traceback.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c Updating dependency information for .core_blast_stat.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c Updating dependency information for .core_blast_setup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c Updating dependency information for .core_blast_seqsrc.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c Updating dependency information for .core_blast_seg.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c Updating dependency information for .core_blast_psi_priv.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c Updating dependency information for .core_na_ungapped.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c Updating dependency information for .core_blast_psi.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c Updating dependency information for .core_blast_options.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c Updating dependency information for .core_blast_message.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c Updating dependency information for .core_blast_nascan.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c Updating dependency information for .core_blast_nalookup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c Updating dependency information for .core_blast_aascan.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c Updating dependency information for .core_blast_aalookup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c Updating dependency information for .core_blast_lookup.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c Updating dependency information for .core_blast_kappa.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c Updating dependency information for .core_blast_itree.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c Updating dependency information for .core_blast_hspstream.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c Updating dependency information for .core_blast_hits.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c Updating dependency information for .core_blast_gapalign.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c Updating dependency information for .core_blast_filter.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c Updating dependency information for .core_blast_extend.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c Updating dependency information for .core_blast_engine.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c Updating dependency information for .core_blast_diagnostics.c. echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_aa_ungapped.c. rm .core_blast_nascan.c .core_blast_diagnostics.c .core_blast_sw.c .core_split_query.c .core_hspfilter_collector.c .core_blast_query_info.c .core_blast_traceback_mt_priv.c .core_blast_engine.c .core_ncbi_std.c .core_blast_aascan.c .core_blast_posit.c .core_na_ungapped.c .core_blast_hits.c .core_blast_traceback.c .core_matrix_freq_ratios.c .core_boost_erf.c .core_phi_extend.c .core_link_hsps.c .core_phi_lookup.c .core_blast_extend.c .core_jumper.c .core_blast_kappa.c .core_blast_psi.c .core_phi_gapalign.c .core_blast_encoding.c .core_spliced_hits.c .core_blast_gapalign.c .core_pattern.c .core_blast_tune.c .core_blast_setup.c .core_blast_hspstream.c .core_blast_psi_priv.c .core_blast_util.c .core_hspfilter_mapper.c .core_gencode_singleton.c .core_blast_lookup.c .core_lookup_wrap.c .core_blast_filter.c .core_index_ungapped.c .core_blast_message.c .core_aa_ungapped.c .core_hspfilter_culling.c .core_blast_options.c .core_blast_seqsrc.c .core_blast_stat.c .core_blast_parameters.c .core_blast_aalookup.c .core_ncbi_math.c .core_greedy_align.c .core_blast_itree.c .core_blast_hspstream_mt_utils.c .core_hspfilter_besthit.c .core_gapinfo.c .core_lookup_util.c .core_blast_dynarray.c .core_blast_seg.c .core_blast_nalookup.c .core_blast_program.c echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_aa_ungapped.c -o .core_aa_ungapped.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_diagnostics.c -o .core_blast_diagnostics.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_engine.c -o .core_blast_engine.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_extend.c -o .core_blast_extend.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_filter.c -o .core_blast_filter.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_gapalign.c -o .core_blast_gapalign.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_hits.c -o .core_blast_hits.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_hspstream.c -o .core_blast_hspstream.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_itree.c -o .core_blast_itree.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_kappa.c -o .core_blast_kappa.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/pytIn file included from .core_hspfilter_culling.c:1:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c: In function 's_BlastHSPCullingRun': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c:287:23: warning: 'node' may be used uninitialized in this function [-Wmaybe-uninitialized] if (r == node->hsplist) { ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c:434:15: note: 'node' was declared here CTreeNode *node; ^ hon3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_lookup.c -o .core_blast_lookup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_aalookup.c -o .core_blast_aalookup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_aascan.c -o .core_blast_aascan.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_nalookup.c -o .core_blast_nalookup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_nascan.c -o .core_blast_nascan.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_message.c -o .core_blast_message.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_options.c -o .core_blast_options.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_psi.c -o .core_blast_psi.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_na_ungapped.c -o .core_na_ungapped.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_psi_priv.c -o .core_blast_psi_priv.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_seg.c -o .core_blast_seg.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_seqsrc.c -o .core_blast_seqsrc.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_setup.c -o .core_blast_setup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_stat.c -o .core_blast_stat.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_traceback.c -o .core_blast_traceback.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_util.c -o .core_blast_util.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_gapinfo.c -o .core_gapinfo.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_greedy_align.c -o .core_greedy_align.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_hspfilter_collector.c -o .core_hspfilter_collector.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_hspfilter_culling.c -o .core_hspfilter_culling.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_link_hsps.c -o .core_link_hsps.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_lookup_util.c -o .core_lookup_util.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_lookup_wrap.c -o .core_lookup_wrap.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_ncbi_std.c -o .core_ncbi_std.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_ncbi_math.c -o .core_ncbi_math.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_encoding.c -o .core_blast_encoding.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_pattern.c -o .core_pattern.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_phi_extend.c -o .core_phi_extend.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_phi_gapalign.c -o .core_phi_gapalign.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_phi_lookup.c -o .core_phi_lookup.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_parameters.c -o .core_blast_parameters.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_posit.c -o .core_blast_posit.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_program.c -o .core_blast_program.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_query_info.c -o .core_blast_query_info.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_tune.c -o .core_blast_tune.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_sw.c -o .core_blast_sw.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_dynarray.c -o .core_blast_dynarray.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_split_query.c -o .core_split_query.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_gencode_singleton.c -o .core_gencode_singleton.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pth/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:36: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:37: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ^ read -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_index_ungapped.c -o .core_index_ungapped.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_boost_erf.c -o .core_boost_erf.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_jumper.c -o .core_jumper.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o echo '#include "/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include .core_spliced_hits.c -o .core_spliced_hits.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 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-I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxblast.a /bin/ln -f .xblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xblast.dep rm .core_spliced_hits.c .core_blast_traceback.c .core_hspfilter_collector.c .core_phi_lookup.c .core_blast_aascan.c .core_blast_filter.c .core_blast_itree.c .core_blast_diagnostics.c .core_blast_message.c .core_phi_gapalign.c .core_phi_extend.c .core_blast_psi.c .core_blast_seg.c .core_blast_psi_priv.c .core_pattern.c .core_blast_hspstream_mt_utils.c .core_blast_query_info.c .core_blast_lookup.c .core_blast_hspstream.c .core_blast_engine.c .core_hspfilter_culling.c .core_blast_seqsrc.c .core_lookup_util.c .core_split_query.c .core_blast_stat.c .core_gencode_singleton.c .core_blast_parameters.c .core_blast_aalookup.c .core_boost_erf.c .core_blast_kappa.c .core_blast_program.c .core_blast_traceback_mt_priv.c .core_gapinfo.c .core_greedy_align.c .core_blast_posit.c .core_na_ungapped.c .core_blast_hits.c .core_blast_extend.c .core_matrix_freq_ratios.c .core_ncbi_std.c .core_blast_encoding.c .core_blast_gapalign.c .core_blast_nascan.c .core_hspfilter_mapper.c .core_lookup_wrap.c .core_ncbi_math.c .core_blast_nalookup.c .core_blast_sw.c .core_index_ungapped.c .core_jumper.c .core_blast_options.c .core_link_hsps.c .core_blast_setup.c .core_blast_dynarray.c .core_aa_ungapped.c .core_hspfilter_besthit.c .core_blast_util.c .core_blast_tune.c gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/api' /usr/pkg/bin/gmake -C proteinkmer -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const __uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (last_oid == *i) ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:84:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:91:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:98:0: warning: ignoring #pragma ivdep [-Wunknown-pragmas] #pragma ivdep ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (hits.size() < numHashes) ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libproteinkmer.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.proteinkmer.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[6]: *** No rule to make target '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer/unit_test' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/proteinkmer' /usr/pkg/bin/gmake -C format -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format TMPL=xblastformat -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:1118:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::string&, std::string&, bool, bool)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiexpt.hpp:42:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/corelib/ncbimisc.hpp:1118:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:49:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:51:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp: In member function 'void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp:520:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^ /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_async_format.cpp:122:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (m_ResultsMap.size() != currNum) ^ gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_async_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxblastformat.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xblastformat.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/format' /usr/pkg/bin/gmake -C blastinput -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT demo/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo/Makefile /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblastinput.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblastinput.a /bin/ln -f .blastinput.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blastinput.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -C unit_test -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test' /usr/pkg/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput/demo' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blastinput' /usr/pkg/bin/gmake -C blast_sra_input -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/blast_sra_input' /usr/pkg/bin/gmake -C igblast -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/igblast TMPL=igblast -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/igblast/igblast.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libigblast.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libigblast.a /bin/ln -f .igblast.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.igblast.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/igblast' /usr/pkg/bin/gmake -C gumbel_params -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/gumbel_params' /usr/pkg/bin/gmake -C unit_tests -w all_r || exit 5 gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' /usr/pkg/bin/gmake -C blast_format -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format' /usr/pkg/bin/gmake -C blastdb -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb' /usr/pkg/bin/gmake -C seqdb_reader -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[6]: Nothing to be done for 'mark-as-disabled_r'. gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader' /usr/pkg/bin/gmake -C api -w all_r || exit 5 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' NOTE: Skipping project api due to unmet requirements: Boost.Test.Included gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w mark-as-disabled gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w mark-as-disabled gmake[7]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[7]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api' gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast/unit_tests' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/blast' /usr/pkg/bin/gmake -C segmask -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w export-headers gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/segmask TMPL=xalgosegmask -w all gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/segmask/segmask.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.a .libxalgosegmask.a.stamp ar cr libxalgosegmask.a segmask.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libxalgosegmask.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxalgosegmask.a /bin/ln -f .xalgosegmask.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.xalgosegmask.dep gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/segmask' /usr/pkg/bin/gmake -C align -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/align' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/align' /usr/pkg/bin/gmake -C structure -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/structure' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/structure' /usr/pkg/bin/gmake -C ms -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/ms' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/ms' /usr/pkg/bin/gmake -C gnomon -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/gnomon' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/gnomon' /usr/pkg/bin/gmake -C tree -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/tree' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/tree' /usr/pkg/bin/gmake -C phy_tree -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/phy_tree' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/phy_tree' /usr/pkg/bin/gmake -C seqqa -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/seqqa' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/seqqa' /usr/pkg/bin/gmake -C cobalt -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/cobalt' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/cobalt' /usr/pkg/bin/gmake -C text -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/text' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/text' /usr/pkg/bin/gmake -C volume_merge -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/volume_merge' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/volume_merge' /usr/pkg/bin/gmake -C primer -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/primer' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/primer' /usr/pkg/bin/gmake -C id_mapper -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo/id_mapper' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/algo' /usr/pkg/bin/gmake -C misc -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/clog/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/clog/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/clog/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT clog/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/clog/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grid_cgi/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grid_cgi/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grid_cgi/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT grid_cgi/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grid_cgi/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlwrapp/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT xmlwrapp/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/eutils_client/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/eutils_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/eutils_client/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT eutils_client/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/eutils_client/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hydra_client/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hydra_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hydra_client/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT hydra_client/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hydra_client/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/discrepancy/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/discrepancy/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/discrepancy/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT discrepancy/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/discrepancy/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlreaders/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlreaders/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/xmlreaders/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT xmlreaders/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlreaders/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hgvs/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hgvs/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/hgvs/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT hgvs/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hgvs/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/netstorage/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/netstorage/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/netstorage/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT netstorage/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/netstorage/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/jsonwrapp/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/jsonwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/jsonwrapp/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT jsonwrapp/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/jsonwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/biosample_util/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/biosample_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/biosample_util/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT biosample_util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/biosample_util/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/data_loaders_util/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/data_loaders_util/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/data_loaders_util/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT data_loaders_util/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/data_loaders_util/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/lapackwrapp/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/lapackwrapp/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT lapackwrapp/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/lapackwrapp/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/pmcidconv_client/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/pmcidconv_client/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pmcidconv_client/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grpc_integration/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grpc_integration/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/grpc_integration/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT grpc_integration/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grpc_integration/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/cgi_redirect/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/misc/cgi_redirect/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT cgi_redirect/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/cgi_redirect/Makefile /usr/pkg/bin/gmake -C third_party -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party' /usr/pkg/bin/gmake -C third_party_static -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[4]: Nothing to be done for 'mark-as-disabled_r'. gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party_static' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/third_party_static' /usr/pkg/bin/gmake -C clog -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/clog' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/clog' /usr/pkg/bin/gmake -C grid_cgi -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grid_cgi' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grid_cgi' /usr/pkg/bin/gmake -C xmlwrapp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlwrapp' /usr/pkg/bin/gmake -C eutils_client -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/eutils_client' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/eutils_client' /usr/pkg/bin/gmake -C hydra_client -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hydra_client' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hydra_client' /usr/pkg/bin/gmake -C discrepancy -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/discrepancy' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/discrepancy' /usr/pkg/bin/gmake -C xmlreaders -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlreaders' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/xmlreaders' /usr/pkg/bin/gmake -C hgvs -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hgvs' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/hgvs' /usr/pkg/bin/gmake -C netstorage -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/netstorage' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/netstorage' /usr/pkg/bin/gmake -C jsonwrapp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/jsonwrapp' /usr/pkg/bin/gmake -C biosample_util -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/biosample_util' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/biosample_util' /usr/pkg/bin/gmake -C data_loaders_util -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/data_loaders_util' /usr/pkg/bin/gmake -C lapackwrapp -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/lapackwrapp' /usr/pkg/bin/gmake -C pmcidconv_client -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/pmcidconv_client' /usr/pkg/bin/gmake -C grpc_integration -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grpc_integration' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/grpc_integration' NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/pkg/bin/gmake -C cgi_redirect -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc/cgi_redirect' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/misc' /usr/pkg/bin/gmake -C gui -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/gui' gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/gui' /usr/pkg/bin/gmake -C app -w all_r || exit 5 gmake[2]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2asn/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2asn/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2asn/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT asn2asn/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2asn/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2fasta/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2fasta/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2fasta/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT asn2fasta/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2fasta/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2flat/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/asn2flat/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel 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/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/split_cache/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT split_cache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/split_cache/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/wig2table/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/wig2table/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/wig2table/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT wig2table/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/wig2table/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/netcache/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/netcache/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/netcache/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT netcache/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/netcache/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/rmblastn/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/rmblastn/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/rmblastn/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT rmblastn/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/rmblastn/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/dblb/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/dblb/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/dblb/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT dblb/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/dblb/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/tls/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/tls/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/tls/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT tls/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/tls/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/idfetch/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/idfetch/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/idfetch/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT idfetch/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/idfetch/Makefile /bin/mkdir -p `/usr/bin/dirname /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/pubseq_gateway/Makefile.in` test -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/pubseq_gateway/Makefile.in || /bin/cp -p /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.in.skel /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/pubseq_gateway/Makefile.in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/update_configurable.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT pubseq_gateway/Makefile config.status: creating /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/pubseq_gateway/Makefile /usr/pkg/bin/gmake -C asn2asn -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2asn' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2asn' /usr/pkg/bin/gmake -C asn2fasta -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2fasta' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2fasta' /usr/pkg/bin/gmake -C asn2flat -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2flat' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn2flat' /usr/pkg/bin/gmake -C asnval -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asnval' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asnval' /usr/pkg/bin/gmake -C asn_cleanup -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn_cleanup' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/asn_cleanup' /usr/pkg/bin/gmake -C id1_fetch -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/id1_fetch' gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/id1_fetch' /usr/pkg/bin/gmake -C blast -w all_r || exit 5 gmake[3]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/legacy_blast.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/legacy_blast.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/legacy_blast.pl gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/update_blastdb.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/update_blastdb.pl /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/update_blastdb.pl gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast -w all gmake[6]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/get_species_taxids.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin /bin/ln -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/get_species_taxids.sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/bin/get_species_taxids.sh gmake[6]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast TMPL=blast_app_util -w export-headers gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast TMPL=blast_app_util -w all gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/blast_app_util.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/sh /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib /bin/ln -f libblast_app_util.a /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/status/.blast_app_util.dep gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /usr/pkg/bin/gmake -f /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app.tmpl srcdir=/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast TMPL=blastp -w all /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `ncbi::CObjectOStreamAsn::CopyBitString(ncbi::CObjectIStream&)': (.text+0x7fa8): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `ncbi::CObjectOStreamAsn::WriteBitString(bm::bvector > > const&)': (.text+0x842c): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `ncbi::CObjectOStreamAsn::WriteBitString(bm::bvector > > const&)': (.text+0x8558): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `ncbi::CObjectOStreamAsn::WriteBitString(bm::bvector > > const&)': (.text+0x87d8): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `ncbi::CObjectOStreamAsn::WriteBitString(bm::bvector > > const&)': (.text+0x8f34): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `ncbi::CObjectOStreamAsn::WriteBitString(bm::bvector > > const&)': (.text+0x8f40): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `ncbi::CObjectOStreamAsn::WriteBitString(bm::bvector > > const&)': (.text+0x94f4): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `_GLOBAL__sub_I_objostrasn.cpp': (.text.startup+0xa0): relocation truncated to fit: GPREL16 against symbol `guard variable for bm::globals::_bo' defined in .sbss._ZGVN2bm7globalsILb1EE3_boE[_ZGVN2bm7globalsILb1EE3_boE] section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseq-static.a(seqtable__.o) /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `_GLOBAL__sub_I_objostrasn.cpp': (.text.startup+0x110): relocation truncated to fit: GPREL16 against symbol `bm::globals::_bo' defined in .sbss._ZN2bm7globalsILb1EE3_boE[_ZN2bm7globalsILb1EE3_boE] section in /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libseq-static.a(seqtable__.o) /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `_GLOBAL__sub_I_objostrasn.cpp': (.text.startup+0x12c): relocation truncated to fit: GPREL16 against symbol `bm::all_set::_block' defined in .bss._ZN2bm7all_setILb1EE6_blockE[_ZN2bm7all_setILb1EE6_blockE] section in blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib/libxser-static.a(objostrasn.o): In function `_GLOBAL__sub_I_objostrasn.cpp': (.text.startup+0x15c): additional relocation overflows omitted from the output gmake[5]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/Makefile.app:156: blastp] Error 1 gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' Updating dependency information for /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/blastp_app.cpp. /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -mieee -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.7 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/inc -I/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/include /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /tmp/pkgbuild/biology/ncbi-blast+/work.alpha/.cwrapper/bin/c++ -std=gnu++11 -Wl,-rpath,/usr/pkg/lib/ncbi-tools++ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O blastp_app.o -Wl,-rpath-link,/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -L/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/lib -lblast_app_util -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lvalid-static -lxobjedit-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -ltaxon3-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lproteinkmer-static -lxblast-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lcreaders-static -lsubmit-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -lxregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -llmdb -lpthread -lz -lbz2 -llzo2 -lz -lm -lpthread -o blastp gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' FAILED: src/app/blast/Makefile.blastp.app gmake[5]: Entering directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' /bin/rm -f blastp .blastp.stamp gmake[5]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[4]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_l:306: all.nonusr] Error 2 gmake[4]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[3]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_l:263: all_l.real] Error 2 gmake[3]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app/blast' gmake[2]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build/app' gmake[1]: *** [/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[1]: Leaving directory '/tmp/pkgbuild/biology/ncbi-blast+/work.alpha/ncbi-blast-2.8.1+-src/c++/ReleaseMT/build' gmake: *** [Makefile:24: all] Error 2 *** Error code 2 Stop. make[1]: stopped in /usr/pkgsrc/biology/ncbi-blast+ *** Error code 1 Stop. make: stopped in /usr/pkgsrc/biology/ncbi-blast+