=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Building for minimap2-2.24nb1
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  main.c -o main.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  kthread.c -o kthread.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  kalloc.c -o kalloc.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  misc.c -o misc.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  bseq.c -o bseq.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  sketch.c -o sketch.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  sdust.c -o sdust.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  options.c -o options.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  index.c -o index.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  lchain.c -o lchain.o
In file included from /usr/include/ctype.h:100,
                 from kseq.h:31,
                 from mmpriv.h:7,
                 from index.c:14:
index.c: In function 'mm_idx_alt_read':
index.c:648:34: warning: array subscript has type 'char' [-Wchar-subscripts]
  648 |   for (p = str.s; *p && !isspace(*p); ++p) { }
      |                                  ^
index.c: In function 'mm_idx_read_bed':
index.c:696:19: warning: array subscript has type 'char' [-Wchar-subscripts]
  696 |      if (!isdigit(*q)) break;
      |                   ^
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  align.c -o align.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  hit.c -o hit.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  seed.c -o seed.o
hit.c: In function 'mm_gen_regs':
hit.c:74:18: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   74 |  r = (mm_reg1_t*)calloc(n_u, sizeof(mm_reg1_t));
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from hit.c:2:
/usr/include/stdlib.h:109:7: note: in a call to allocation function 'calloc' declared here
  109 | void *calloc(size_t, size_t);
      |       ^~~~~~
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  map.c -o map.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  format.c -o format.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  pe.c -o pe.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  esterr.c -o esterr.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -DHAVE_KALLOC  splitidx.c -o splitidx.o
gcc -c -O2 -mieee -I/usr/include -Wall -Wc++-compat  -msse2 -DHAVE_KALLOC  ksw2_ll_sse.c -o ksw2_ll_sse.o
gcc: error: unrecognized command-line option '-msse2'
gmake: *** [Makefile:63: ksw2_ll_sse.o] Error 1
gmake: *** Waiting for unfinished jobs....
*** Error code 2

Stop.
make[1]: stopped in /usr/pkgsrc/biology/minimap2
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/biology/minimap2